RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 C12orf10Q9HB07 376 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 EXD2Q9NVH0 621 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 KCNN3Q9UGI6 736 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 TMEFF2Q9UIK5 374 aaPredicted RBP10.63□□□□□ -0.71
UPF3A-212ENST00000619079 NOD1Q9Y239 953 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 RNF6Q9Y252 685 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 GPSM3Q9Y4H4 160 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 PCDHB14Q9Y5E9 798 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 LYVE1Q9Y5Y7 322 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 FADS2P1A8MWK0 482 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 DBTP11182 482 aaKnown RBP10.63□□□□□ -0.71
UPF3A-212ENST00000619079 MAGP20916 626 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 RPS5P46782 204 aaKnown RBP10.63□□□□□ -0.71
UPF3A-212ENST00000619079 XKR7Q5GH72 579 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 CCNJQ5T5M9 372 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 TRAF7Q6Q0C0 670 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 DLEU7Q6UYE1 221 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 IDO2Q6ZQW0 420 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 ARHGAP36Q6ZRI8 547 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 NOXA1Q86UR1 476 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 CRYBG2Q8N1P7 616 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 FLCNQ8NFG4 579 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 FRS2Q8WU20 508 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 DPF3Q92784 378 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 KIF12Q96FN5 646 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 ZNF668Q96K58 619 aaPredicted RBP10.63□□□□□ -0.71
UPF3A-212ENST00000619079 SLC2A13Q96QE2 648 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 PIGVQ9NUD9 493 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 ADGRE2Q9UHX3 823 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 ITM2BQ9Y287 266 aa10.63□□□□□ -0.71
UPF3A-212ENST00000619079 FAM72CH0Y354 149 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 PQBP1O60828 265 aaKnown RBP10.62□□□□□ -0.71
UPF3A-212ENST00000619079 UGT2B17O75795 530 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 RPLP0P05388 317 aaKnown RBP10.62□□□□□ -0.71
UPF3A-212ENST00000619079 RETP07949 1114 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 SERPINF2P08697 491 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 IL1RNP18510 177 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 EFNA1P20827 205 aaPredicted RBP10.62□□□□□ -0.71
UPF3A-212ENST00000619079 SOX6P35712 828 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 KCNC1P48547 511 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 ARHGDIAP52565 204 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 UGT2B15P54855 530 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 MTPNP58546 118 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 PWP1Q13610 501 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 SMU1Q2TAY7 513 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 CDONQ4KMG0 1287 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 FAM72AQ5TYM5 149 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 FAM72DQ6L9T8 149 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 TXNDC11Q6PKC3 985 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 XKRXQ6PP77 449 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 ENPP6Q6UWR7 440 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 ZNF438Q7Z4V0 828 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 FAM72BQ86X60 149 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 GRAMD2AQ8IUY3 354 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 SLC22A15Q8IZD6 547 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 ST13P5Q8NFI4 369 aaPredicted RBP10.62□□□□□ -0.71
UPF3A-212ENST00000619079 SPATA22Q8NHS9 363 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 EXT2Q93063 718 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 FAM162AQ96A26 154 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 PDLIM5Q96HC4 596 aaKnown RBP10.62□□□□□ -0.71
UPF3A-212ENST00000619079 PPM1MQ96MI6 270 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 KCNA7Q96RP8 456 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 CDADC1Q9BWV3 514 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 GABARAPL1Q9H0R8 117 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 ZFP14Q9HCL3 533 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 TRMT13Q9NUP7 481 aaKnown RBP10.62□□□□□ -0.71
UPF3A-212ENST00000619079 TRAPPC4Q9Y296 219 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 SPEF1Q9Y4P9 236 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 PCDHGB2Q9Y5G2 931 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 GMPPBQ9Y5P6 360 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 COL1A2P08123 1366 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 KRT87PA6NCN2 255 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 POLR1CO15160 346 aaPredicted RBP10.62□□□□□ -0.71
UPF3A-212ENST00000619079 PGLSO95336 258 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 GOT2P00505 430 aaKnown RBP10.62□□□□□ -0.71
UPF3A-212ENST00000619079 SMIM10L2AP0DMW4 78 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 SMIM10L2BP0DMW5 78 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 CD1DP15813 335 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 CYP2A7P20853 494 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 CCNCP24863 283 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 ADRA1AP35348 466 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 HNF4AP41235 474 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 MNX1P50219 401 aaPredicted RBP10.62□□□□□ -0.71
UPF3A-212ENST00000619079 PITX1P78337 314 aaPredicted RBP10.62□□□□□ -0.71
UPF3A-212ENST00000619079 ADIGQ0VDE8 80 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 SUZ12Q15022 739 aaKnown RBP10.62□□□□□ -0.71
UPF3A-212ENST00000619079 PFKFB4Q16877 469 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 PROX2Q3B8N5 592 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 TBRG1Q3YBR2 411 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 FBXO43Q4G163 708 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 SHQ1Q6PI26 577 aaKnown RBP10.62□□□□□ -0.71
UPF3A-212ENST00000619079 SPATC1Q76KD6 591 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 TSPYL5Q86VY4 417 aaPredicted RBP10.62□□□□□ -0.71
UPF3A-212ENST00000619079 CILP2Q8IUL8 1156 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 FAM126BQ8IXS8 530 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 SLC38A6Q8IZM9 456 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 ABI1Q8IZP0 508 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 LRRC52Q8N7C0 313 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 FAM86B1Q8N7N1 296 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 LSMEM1Q8N8F7 131 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms