RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 CACHD1Q5VU97 1274 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 PWWP2BQ6NUJ5 590 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 HIBCHQ6NVY1 386 aaPredicted RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 TMEM207Q6UWW9 146 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 PIWIL4Q7Z3Z4 852 aaKnown RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 WDR36Q8NI36 951 aaKnown RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 DENND1AQ8TEH3 1009 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 SKA2Q8WVK7 121 aaPredicted RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 MRRFQ96E11 262 aaKnown RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 LINC00615Q96LM1 132 aaPredicted RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 RANBP9Q96S59 729 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 DMGDHQ9UI17 866 aaKnown RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 ADAMTS6Q9UKP5 1117 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 ZKSCAN5Q9Y2L8 839 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 BAHCC1Q9P281 2608 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 ERI2A8K979 691 aaKnown RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 AHSGP02765 367 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 PNLIPP16233 465 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 AOAHP28039 575 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 CASQ1P31415 396 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 SLC9A5Q14940 896 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 NEPROQ6NW34 567 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 PPIL6Q8IXY8 311 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 LIN37Q96GY3 246 aaPredicted RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 CMKLR1Q99788 373 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 MACROD1Q9BQ69 325 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 FRMD8P1Q9BZ68 369 aaPredicted RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 KIR3DX1Q9H7L2 352 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 CAB39LQ9H9S4 337 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 SIDT1Q9NXL6 827 aaKnown RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 LHX6Q9UPM6 363 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 SH2B3Q9UQQ2 575 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 TNRC6AQ8NDV7 1962 aaKnown RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 LOC101059948A0A1B0GTJ6 334 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 SDR42E2A6NKP2 422 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 EFCAB8A8MWE9 144 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 FFAR3O14843 346 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 GPR42O15529 346 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 DUX1O43812 170 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 GPC4O75487 556 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 URI1O94763 535 aaPredicted RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 MED26O95402 600 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 ITGA2BP08514 1039 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 SAT1P21673 171 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 MCM3P25205 808 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 GPR3P46089 330 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 FNTAP49354 379 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 GPR33Q49SQ1 333 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 ZDHHC24Q6UX98 284 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 FBXO25Q8TCJ0 367 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 HM13Q8TCT9 377 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 OLFM1Q99784 485 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 SLC39A1Q9NY26 324 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 PDP2Q9P2J9 529 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 A0A087WV48 116 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 OR5K3A6NET4 321 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 NKX2-8O15522 239 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 CHRM3P20309 590 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 PRDX3P30048 256 aaKnown RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 CARSP49589 748 aaKnown RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 CLCN7P51798 805 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 C18orf21Q32NC0 220 aaPredicted RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 PTRHD1Q6GMV3 140 aaKnown RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 PLD3Q8IV08 490 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 CPNE9Q8IYJ1 553 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 FBXO36Q8NEA4 188 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 GPR21Q99679 349 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 PPANQ9NQ55 473 aaKnown RBP5.53□□□□□ -1.52
CPNE3-208ENST00000614678 POT1Q9NUX5 634 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 PILRAQ9UKJ1 303 aa5.53□□□□□ -1.52
CPNE3-208ENST00000614678 FOXO6A8MYZ6 492 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 PRMT5O14744 637 aaPredicted RBP5.52□□□□□ -1.53
CPNE3-208ENST00000614678 PRKAR1AP10644 381 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 RBMS1P29558 406 aaKnown RBP5.52□□□□□ -1.53
CPNE3-208ENST00000614678 CSTF2P33240 577 aaKnown RBP eCLIP5.52□□□□□ -1.53
CPNE3-208ENST00000614678 NPY2RP49146 381 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 PDIA2Q13087 525 aaKnown RBP5.52□□□□□ -1.53
CPNE3-208ENST00000614678 KRT33BQ14525 404 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 KLHL38Q2WGJ6 581 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 AGAP9Q5VTM2 703 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 WASH2PQ6VEQ5 465 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 PACS1Q6VY07 963 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 PDZD3Q86UT5 571 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 KCNMB4Q86W47 210 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 GSPT2Q8IYD1 628 aaKnown RBP5.52□□□□□ -1.53
CPNE3-208ENST00000614678 METTL27Q8N6F8 245 aaPredicted RBP5.52□□□□□ -1.53
CPNE3-208ENST00000614678 GALNT6Q8NCL4 622 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 UHMK1Q8TAS1 419 aaKnown RBP5.52□□□□□ -1.53
CPNE3-208ENST00000614678 DTX3LQ8TDB6 740 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 LCN9Q8WX39 176 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 STAMBPL1Q96FJ0 436 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 WASH6PQ9NQA3 447 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 RAD18Q9NS91 495 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 NCKIPSDQ9NZQ3 722 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 PCDHGA8Q9Y5G5 932 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 TEX264Q9Y6I9 313 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 CSMD1Q96PZ7 3565 aa5.52□□□□□ -1.53
CPNE3-208ENST00000614678 MN1Q10571 1320 aaPredicted RBP5.52□□□□□ -1.53
CPNE3-208ENST00000614678 K7EM74 188 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms