RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 PCDHA9Q9Y5H5 950 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 ZFP37Q9Y6Q3 630 aaPredicted RBP12.38□□□□□ -0.43
LIG1-221ENST00000613670 UPK3BL1B0FP48 263 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 UPK3BL2E5RIL1 263 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 SLC28A1O00337 649 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 PER2O15055 1255 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 ANXA5P08758 320 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 POU2F1P14859 743 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 AZGP1P25311 298 aaKnown RBP12.37□□□□□ -0.43
LIG1-221ENST00000613670 PGFP49763 221 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 ARMC12Q5T9G4 340 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 C9orf131Q5VYM1 1079 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 SPRED1Q7Z699 444 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 ZNF598Q86UK7 904 aaKnown RBP12.37□□□□□ -0.43
LIG1-221ENST00000613670 SLC7A5P1Q8MH63 180 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 SCML4Q8N228 414 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 STK40Q8N2I9 435 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 OR9Q1Q8NGQ5 310 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 TSPAN18Q96SJ8 248 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 ATOH8Q96SQ7 321 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 MGAT4DA6NG13 374 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 UGT2B11O75310 529 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 CCNKO75909 580 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 C7P10643 843 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 MZF1P28698 734 aaPredicted RBP12.37□□□□□ -0.43
LIG1-221ENST00000613670 ATP5C1P36542 298 aaKnown RBP12.37□□□□□ -0.43
LIG1-221ENST00000613670 DGKEP52429 567 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 LETMD1Q6P1Q0 360 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 LINC01465Q8N7H1 131 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 FAM86B1Q8N7N1 296 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 PSD4Q8NDX1 1056 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 NDNFQ8TB73 568 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 MED8Q96G25 268 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 DCSTAMPQ9H295 470 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 CCSER2Q9H7U1 834 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 C1orf109Q9NX04 203 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 BTBD3Q9Y2F9 522 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 SPO11Q9Y5K1 396 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 SLC22A1O15245 554 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 CRHBPP24387 322 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 YBX1P67809 324 aaKnown RBP12.37□□□□□ -0.43
LIG1-221ENST00000613670 PTPRRQ15256 657 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 AAK1Q2M2I8 961 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 PDE12Q6L8Q7 609 aaKnown RBP12.37□□□□□ -0.43
LIG1-221ENST00000613670 FAM117BQ6P1L5 589 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 SCD5Q86SK9 330 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 ZFAND4Q86XD8 727 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 GPR156Q8NFN8 814 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 PROKR1Q8TCW9 393 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 SH3YL1Q96HL8 342 aaPredicted RBP12.37□□□□□ -0.43
LIG1-221ENST00000613670 ATG10Q9H0Y0 220 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 PCTPQ9UKL6 214 aa12.37□□□□□ -0.43
LIG1-221ENST00000613670 PRAMEF1O95521 474 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 MT-ND2P03891 347 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 ALPIP09923 528 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 GSTM2P28161 218 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 CRATP43155 626 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 COPZ1P61923 177 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 ACSM2AQ08AH3 577 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 RAPSNQ13702 412 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 ATXN7L2Q5T6C5 722 aaPredicted RBP12.36□□□□□ -0.43
LIG1-221ENST00000613670 ACSM2BQ68CK6 577 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 OR13F1Q8NGS4 319 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 COPS4Q9BT78 406 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 NUDT4Q9NZJ9 180 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 TESMINQ9Y4I5 508 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 STK16O75716 305 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 GLUD1P00367 558 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 MAPK1P28482 360 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 FAM189BP81408 668 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 IRF8Q02556 426 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 CCDC80Q76M96 950 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 PIANPQ8IYJ0 282 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 UMODL1-AS1Q8N2C9 162 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 GIMAP4Q9NUV9 329 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 GTF2IRD1Q9UHL9 959 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 ITGB1BP2Q9UKP3 347 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 SARDHQ9UL12 918 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 SAMD4AQ9UPU9 718 aaKnown RBP12.36□□□□□ -0.43
LIG1-221ENST00000613670 ANKRD31Q8N7Z5 1873 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 LOC730098B7Z3J9 87 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 IDH3BO43837 385 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 GTF2E2P29084 291 aaKnown RBP12.36□□□□□ -0.43
LIG1-221ENST00000613670 KIR3DL1P43629 444 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 RPS14P62263 151 aaKnown RBP12.36□□□□□ -0.43
LIG1-221ENST00000613670 SERPINA9Q86WD7 417 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 CLIP4Q8N3C7 705 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 SCAIQ8N9R8 606 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 TSPEARQ8WU66 669 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 UHRF1Q96T88 793 aaPredicted RBP12.36□□□□□ -0.43
LIG1-221ENST00000613670 ZNF451Q9Y4E5 1061 aa12.36□□□□□ -0.43
LIG1-221ENST00000613670 TCF3P15923 654 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 HTR1BP28222 390 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 SERINC3Q13530 473 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 UPP1Q16831 310 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 UGT3A2Q3SY77 523 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 GOLM1Q8NBJ4 401 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 CHDHQ8NE62 594 aaPredicted RBP12.35□□□□□ -0.43
LIG1-221ENST00000613670 UBASH3BQ8TF42 649 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 ADPRHL2Q9NX46 363 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms