RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 SUPT20HL1Q3ZLR7 823 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 KLHL22Q53GT1 634 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 CABLES1Q8TDN4 633 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 ELP5Q8TE02 316 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 ELMO3Q96BJ8 720 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 EGFL8Q99944 293 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 GSX2Q9BZM3 304 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 GMPR2Q9P2T1 348 aaKnown RBP4.88□□□□□ -1.63
VPS13D-213ENST00000613099 TCAPO15273 167 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 AKAP3O75969 853 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 MAT1AQ00266 395 aaKnown RBP4.88□□□□□ -1.63
VPS13D-213ENST00000613099 IDI1Q13907 227 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 NAPEPLDQ6IQ20 393 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 ZCCHC12Q6PEW1 402 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 ZNF615Q8N8J6 731 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 OR56A4Q8NGH8 313 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 SPATA22Q8NHS9 363 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 NDNFQ8TB73 568 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 ZNF669Q96BR6 464 aaPredicted RBP4.88□□□□□ -1.63
VPS13D-213ENST00000613099 SLITRK1Q96PX8 696 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 TXLNGYQ9BZA5 131 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 EIF2B4Q9UI10 523 aaKnown RBP4.88□□□□□ -1.63
VPS13D-213ENST00000613099 SCP2D1Q9UJQ7 156 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 RNF112Q9ULX5 631 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 AAR2Q9Y312 384 aaKnown RBP4.88□□□□□ -1.63
VPS13D-213ENST00000613099 PRKAB1Q9Y478 270 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 PCDHGB2Q9Y5G2 931 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 A0A1W2PRQ8 180 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 PPP3R1P63098 170 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 ATF7IP2Q5U623 682 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 ZNF549Q6P9A3 640 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 OR2T11Q8NH01 316 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 NEURL2Q9BR09 285 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 AXIN2Q9Y2T1 843 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 PRRC2BQ5JSZ5 2229 aaKnown RBP4.88□□□□□ -1.63
VPS13D-213ENST00000613099 ASXL3Q9C0F0 2248 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 H3BN98 237 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 BANF1O75531 89 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 RLN2P04090 185 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 CRTC2Q53ET0 693 aaPredicted RBP4.88□□□□□ -1.63
VPS13D-213ENST00000613099 EEPD1Q7L9B9 569 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 ABRAQ8N0Z2 381 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 KIF25Q9UIL4 384 aa4.88□□□□□ -1.63
VPS13D-213ENST00000613099 SAMD4AQ9UPU9 718 aaKnown RBP4.88□□□□□ -1.63
VPS13D-213ENST00000613099 SSX4O60224 188 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 CFBP00751 764 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 JAK3P52333 1124 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 ZNF600Q6ZNG1 722 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 CPNE9Q8IYJ1 553 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 DAGLBQ8NCG7 672 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 CERS2Q96G23 380 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 JPH1Q9HDC5 661 aaPredicted RBP4.87□□□□□ -1.63
VPS13D-213ENST00000613099 DERAQ9Y315 318 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 REEP5Q00765 189 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 GK3PQ14409 553 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 TMEM132BQ14DG7 1078 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 SHROOM1Q2M3G4 852 aaPredicted RBP4.87□□□□□ -1.63
VPS13D-213ENST00000613099 DNAJB14Q8TBM8 379 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 OR2M2Q96R28 347 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 MED10Q9BTT4 135 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 THUMPD1Q9NXG2 353 aaKnown RBP4.87□□□□□ -1.63
VPS13D-213ENST00000613099 RNF215Q9Y6U7 377 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 SGPL1O95470 568 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 FAM102AQ5T9C2 384 aaPredicted RBP4.87□□□□□ -1.63
VPS13D-213ENST00000613099 KCNT2Q6UVM3 1135 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 OR2T12Q8NG77 320 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 OR2L5Q8NG80 312 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 TPD52L3Q96J77 140 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 HEBP1Q9NRV9 189 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 AGPAT3Q9NRZ7 376 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 RGS4P49798 205 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 SYTL3Q4VX76 610 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 SEMA6DQ8NFY4 1073 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 CD300LFQ8TDQ1 290 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 FOPNLQ96NB1 174 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 NFKBIZQ9BYH8 718 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 OR51J1Q9H342 316 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 FBXO8Q9NRD0 319 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 AGO2Q9UKV8 859 aaKnown RBP4.87□□□□□ -1.63
VPS13D-213ENST00000613099 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.87□□□□□ -1.63
VPS13D-213ENST00000613099 COL1A1P02452 1464 aaPredicted RBP4.87□□□□□ -1.63
VPS13D-213ENST00000613099 ADAMDEC1O15204 470 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 ANXA9O76027 345 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 ZNF432O94892 652 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 ZNF667Q5HYK9 610 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 TOMM5Q8N4H5 51 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 REPS2Q8NFH8 660 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 NIP7Q9Y221 180 aaKnown RBP eCLIP4.87□□□□□ -1.63
VPS13D-213ENST00000613099 CBY3A6NI87 242 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 ZNF98A6NK75 572 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 A8MU76 341 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 KBTBD13C9JR72 458 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 HOXC11O43248 304 aaPredicted RBP4.87□□□□□ -1.63
VPS13D-213ENST00000613099 NDUFB10O96000 172 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 CSF2P04141 144 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 EPCAMP16422 314 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 EIF6P56537 245 aaKnown RBP4.87□□□□□ -1.63
VPS13D-213ENST00000613099 FGFBP1Q14512 234 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 HSDL2Q6YN16 418 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 WDR53Q7Z5U6 358 aaPredicted RBP4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 242.7 ms