RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 TFB1MQ8WVM0 346 aaKnown RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 FKBP10Q96AY3 582 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 AGAP4Q96P64 663 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 OLFM3Q96PB7 478 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 FCRL5Q96RD9 977 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 INSM2Q96T92 566 aaPredicted RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 COPS8Q99627 209 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 NDC1Q9BTX1 674 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 TLR10Q9BXR5 811 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 DEF6Q9H4E7 631 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 AKIRIN1Q9H9L7 192 aaPredicted RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 CHST11Q9NPF2 352 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 ZNHIT6Q9NWK9 470 aaKnown RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 IL1RAPL1Q9NZN1 696 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 KLHL8Q9P2G9 620 aaPredicted RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 SUCOQ9UBS9 1254 aaKnown RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 POLG2Q9UHN1 485 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 FEZ2Q9UHY8 353 aaPredicted RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 AAR2Q9Y312 384 aaKnown RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 PTRH2Q9Y3E5 179 aaKnown RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 KLF2Q9Y5W3 355 aaPredicted RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 SVILO95425 2214 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 A0A087X0T9 212 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 CCDC66A2RUB6 948 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 HACD1B0YJ81 288 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 AGPSO00116 658 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 PCDH17O14917 1159 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 ZSCAN9O15535 394 aaPredicted RBP6.09□□□□□ -1.43
CUX1-220ENST00000607092 LDB2O43679 373 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 KRT86O43790 486 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 FKBP9O95302 570 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 MT-CYBP00156 380 aaPredicted RBP6.09□□□□□ -1.43
CUX1-220ENST00000607092 RPN2P04844 631 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 CAPN1P07384 714 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 TPM1P09493 284 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 FAM228BP0C875 321 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 FDXRP22570 491 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 PTPN3P26045 913 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 PTGER4P35408 488 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 GLRBP48167 497 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 CARSP49589 748 aaKnown RBP6.09□□□□□ -1.43
CUX1-220ENST00000607092 PRLHRP49683 370 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 CTSCP53634 463 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 GEMP55040 296 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 PPP1CAP62136 330 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 ABRQ12979 859 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 ART3Q13508 389 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 PRPSAP1Q14558 356 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 NR1I3Q14994 352 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 PRKD1Q15139 912 aaPredicted RBP6.09□□□□□ -1.43
CUX1-220ENST00000607092 TAF1AQ15573 450 aaPredicted RBP6.09□□□□□ -1.43
CUX1-220ENST00000607092 ZRSR2Q15696 482 aaKnown RBP6.09□□□□□ -1.43
CUX1-220ENST00000607092 SLC1A5Q15758 541 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 SLC18A3Q16572 532 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 SLC5A12Q1EHB4 618 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 ATP13A4Q4VNC1 1196 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 KHDC1Q4VXA5 237 aaKnown RBP6.09□□□□□ -1.43
CUX1-220ENST00000607092 PRR30Q53SZ7 412 aaPredicted RBP6.09□□□□□ -1.43
CUX1-220ENST00000607092 SIRPB2Q5JXA9 342 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 C1QL3Q5VWW1 255 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 E4F1Q66K89 784 aaPredicted RBP6.09□□□□□ -1.43
CUX1-220ENST00000607092 HIST2H2BCQ6DN03 193 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 RPUSD3Q6P087 351 aaKnown RBP6.09□□□□□ -1.43
CUX1-220ENST00000607092 FAM180AQ6UWF9 173 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 FAM83HQ6ZRV2 1179 aaPredicted RBP6.09□□□□□ -1.43
CUX1-220ENST00000607092 PID1Q7Z2X4 250 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 AMIGO1Q86WK6 493 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 TMTC1Q8IUR5 882 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 CFAP206Q8IYR0 622 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 BCORP1Q8N888 145 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 SLC38A9Q8NBW4 561 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 SPATA22Q8NHS9 363 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 DNAJB14Q8TBM8 379 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 FAR1Q8WVX9 515 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 P3H4Q92791 437 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 SLC22A18Q96BI1 424 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 HAUS1Q96CS2 278 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 RBM41Q96IZ5 413 aaKnown RBP6.09□□□□□ -1.43
CUX1-220ENST00000607092 BTBD6Q96KE9 485 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 GBP5Q96PP8 586 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 TRAPPC9Q96Q05 1148 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 FERD3LQ96RJ6 166 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 RUFY1Q96T51 708 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 TTC1Q99614 292 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 HSD3B7Q9H2F3 369 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 ZNF552Q9H707 407 aaPredicted RBP6.09□□□□□ -1.43
CUX1-220ENST00000607092 ASB8Q9H765 288 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 WDR54Q9H977 334 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 BPIFA1Q9NP55 256 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 INTS7Q9NVH2 962 aaKnown RBP6.09□□□□□ -1.43
CUX1-220ENST00000607092 IRAK4Q9NWZ3 460 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 P4HTMQ9NXG6 502 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 OR6C2Q9NZP2 312 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 CRLS1Q9UJA2 301 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 TMPRSS11EQ9UL52 423 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 CAPN11Q9UMQ6 739 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.09□□□□□ -1.43
CUX1-220ENST00000607092 SPO11Q9Y5K1 396 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 MRFAP1Q9Y605 127 aa6.09□□□□□ -1.43
CUX1-220ENST00000607092 ZFHX3Q15911 3703 aa6.09□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms