RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 HSPA7P48741 367 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 LIMK2P53671 638 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 LRRC70Q7Z2Q7 622 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 PDPRQ8NCN5 879 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 AENQ8WTP8 325 aaKnown RBP20.12■□□□□ 0.81
UPF1-207ENST00000599848 FCRL4Q96PJ5 515 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 ZNF347Q96SE7 839 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 DKKL1Q9UK85 242 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 TLL2Q9Y6L7 1015 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 PTPN5P54829 565 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 HSDL2Q6YN16 418 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 PRELID2Q8N945 189 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 OR4C15Q8NGM1 316 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 TWIST2Q8WVJ9 160 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 PSMG2Q969U7 264 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 ACTL8Q9H568 366 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 METTL7AQ9H8H3 244 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 TRIM64A6NGJ6 449 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 NR4A1P22736 598 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 EIF4HQ15056 248 aaKnown RBP20.12■□□□□ 0.81
UPF1-207ENST00000599848 LINC00471Q8N535 108 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 LRRC17Q8N6Y2 441 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 SCGB2A1O75556 95 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 HBQ1P09105 142 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 SHMT2P34897 504 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 ZYG11AQ6WRX3 759 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 FCRL5Q96RD9 977 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 RAB21Q9UL25 225 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 ACSL5Q9ULC5 683 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 TNFRSF11BO00300 401 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 MTHFD1P11586 935 aaKnown RBP20.12■□□□□ 0.81
UPF1-207ENST00000599848 CDH13P55290 713 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 DGCR6Q14129 220 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 ANO7Q6IWH7 933 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 USP29Q9HBJ7 922 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 TIGARQ9NQ88 270 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 DHRS7Q9Y394 339 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 TACSTD2P09758 323 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 MYLK3Q32MK0 819 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 OLFML2AQ68BL7 652 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 AAGABQ6PD74 315 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 ZNF852Q6ZMS4 543 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 ZNF783Q6ZMS7 281 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 DCAF4L2Q8NA75 395 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 HM13Q8TCT9 377 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 KLK6Q92876 244 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 CST11Q9H112 138 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 EPB41L1Q9H4G0 881 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 PHF24Q9UPV7 400 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 LOC110117498-PIK3R3F6TDL0 507 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 G3V2T6 193 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 FFAR2O15552 330 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 BPGMP07738 259 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 ZNF20P17024 532 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 IFI35P80217 286 aaPredicted RBP20.11■□□□□ 0.81
UPF1-207ENST00000599848 XIAPP98170 497 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 PCDH1Q08174 1060 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 SEMA5AQ13591 1074 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 CCL14Q16627 93 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 SLC10A6Q3KNW5 377 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 PIK3R3Q92569 461 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 DGCR6LQ9BY27 220 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 RNF186Q9NXI6 227 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 MAP4K5Q9Y4K4 846 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 ATRNL1Q5VV63 1379 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 CCDC182A6NF36 153 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 MAGEB17A8MXT2 336 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 K7EPI3 171 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 TLR1Q15399 786 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 SPIN4Q56A73 249 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 SLC36A4Q6YBV0 504 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 ARMCX6Q7L4S7 300 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 MREGQ8N565 214 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 THRSPQ92748 146 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 TFB2MQ9H5Q4 396 aaKnown RBP20.11■□□□□ 0.81
UPF1-207ENST00000599848 MUSKO15146 869 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 DUX1O43812 170 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 AP2A2O94973 939 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 OAS1P00973 400 aaKnown RBP20.11■□□□□ 0.81
UPF1-207ENST00000599848 HMGN1P05114 100 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 HAPLN1P10915 354 aaPredicted RBP20.11■□□□□ 0.81
UPF1-207ENST00000599848 ZNF41P51814 821 aaPredicted RBP20.11■□□□□ 0.81
UPF1-207ENST00000599848 PLP2Q04941 152 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 HSPB3Q12988 150 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 ENPP2Q13822 863 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 IL23RQ5VWK5 629 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 GRASPQ7Z6J2 395 aaPredicted RBP20.11■□□□□ 0.81
UPF1-207ENST00000599848 CREG2Q8IUH2 290 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 MR1Q95460 341 aa20.11■□□□□ 0.81
UPF1-207ENST00000599848 RBM4BQ9BQ04 359 aaKnown RBP20.11■□□□□ 0.81
UPF1-207ENST00000599848 RBM4Q9BWF3 364 aaKnown RBP20.11■□□□□ 0.81
UPF1-207ENST00000599848 POLR3BQ9NW08 1133 aaPredicted RBP20.11■□□□□ 0.81
UPF1-207ENST00000599848 TULP3O75386 442 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 FARS2O95363 451 aaKnown RBP20.1■□□□□ 0.81
UPF1-207ENST00000599848 KCNE1P15382 129 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 NRLP54845 237 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 MON1BQ7L1V2 547 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 CROCCP3Q8IVE0 287 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 C10orf107Q8IVU9 208 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 OR2L5Q8NG80 312 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms