RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 ICKQ9UPZ9 632 aa18.97■□□□□ 0.63
SHKBP1-221ENST00000599833 VPS9D1Q9Y2B5 631 aa18.97■□□□□ 0.63
SHKBP1-221ENST00000599833 LOXL2Q9Y4K0 774 aa18.97■□□□□ 0.63
SHKBP1-221ENST00000599833 COLEC10Q9Y6Z7 277 aa18.97■□□□□ 0.63
SHKBP1-221ENST00000599833 OR5K3A6NET4 321 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 F8W8V4 182 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 IFRD1O00458 451 aaPredicted RBP18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 PLD2O14939 933 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 HGSO14964 777 aaPredicted RBP18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 APOA4P06727 396 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 ANKRD34CP0C6C1 535 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 CCL4P13236 92 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 ITIH1P19827 911 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 NDUFS1P28331 727 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 ATP5DP30049 168 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 SSTR1P30872 391 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 ABCG1P45844 678 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 EIF3IQ13347 325 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 RBM20Q5T481 1227 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 UBAP2Q5T6F2 1119 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 PHF19Q5T6S3 580 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 RAB11FIP2Q7L804 512 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 TBC1D21Q8IYX1 336 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 CD200R1Q8TD46 325 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 PMEPA1Q969W9 287 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 SLC46A1Q96NT5 459 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 HGH1Q9BTY7 390 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 SIDT1Q9NXL6 827 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 KLHL42Q9P2K6 505 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 RUVBL2Q9Y230 463 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 NFS1Q9Y697 457 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 AHCTF1Q8WYP5 2266 aa18.96■□□□□ 0.63
SHKBP1-221ENST00000599833 TMEM8BA6NDV4 472 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 BTN3A3O00478 584 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 PFDN6O15212 129 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 PIAS1O75925 651 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 MATN4O95460 622 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 FGF3P11487 239 aaPredicted RBP18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 PRKG2Q13237 762 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 ACSBG2Q5FVE4 666 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 CYHR1Q6ZMK1 362 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 OTOAQ7RTW8 1153 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 PRSS42Q7Z5A4 293 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 CLEC14AQ86T13 490 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 PROSER1Q86XN7 944 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 ADGRF3Q8IZF5 1079 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 SIDT2Q8NBJ9 832 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 FLVCR1-AS1Q8TAF5 88 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 TGM7Q96PF1 710 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 STRADBQ9C0K7 418 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 CCDC86Q9H6F5 360 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 OCIAD1Q9NX40 245 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 SDK2Q58EX2 2172 aa18.95■□□□□ 0.62
SHKBP1-221ENST00000599833 CXorf49A8MYA2 514 aaPredicted RBP18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 BTN3A1O00481 513 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 KPNA5O15131 536 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 AMD1P17707 334 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 KPNA2P52292 529 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 CDKN2DP55273 166 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 MGAT5Q09328 741 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 ABRQ12979 859 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 TBC1D25Q3MII6 688 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 CCSMST1Q4G0I0 132 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 GLE1Q53GS7 698 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 UNC5DQ6UXZ4 953 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 CYS1Q717R9 158 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 PLXDC1Q8IUK5 500 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 FBXO39Q8N4B4 442 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 ZBTB2Q8N680 514 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 CEP112Q8N8E3 955 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 OR4E2Q8NGC2 313 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 PYROXD1Q8WU10 500 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 ZCCHC14Q8WYQ9 949 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 KLHL6Q8WZ60 621 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 PPM1MQ96MI6 270 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 NDNQ99608 321 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 GPR21Q99679 349 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 XKR8Q9H6D3 395 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 LRRC4CQ9HCJ2 640 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 ASF1AQ9Y294 204 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 DHRS7Q9Y394 339 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 COMMD10Q9Y6G5 202 aa18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 URB1O60287 2271 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-221ENST00000599833 TCRBV9S1A1TA0A576 114 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 KRT87PA6NCN2 255 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 OR6C74A6NCV1 312 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 A8MU76 341 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 AGRPO00253 132 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 TOX3O15405 576 aaPredicted RBP18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 ZNF500O60304 480 aaPredicted RBP18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 C1orf105O95561 183 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 CHRM3P20309 590 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 CD9P21926 228 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 PEBP1P30086 187 aaKnown RBP18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 PGGT1BP53609 377 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 PLCL1Q15111 1095 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 TMED2Q15363 201 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 KYNUQ16719 465 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 ZNF449Q6P9G9 518 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 LINC01555Q8NAE3 123 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms