RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 XKR5Q6UX68 686 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 C6orf15Q6UXA7 325 aaPredicted RBP13.75□□□□□ -0.21
LIG1-218ENST00000599322 ZNF534Q76KX8 674 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 OTOAQ7RTW8 1153 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 VASH2Q86V25 355 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 PPIL6Q8IXY8 311 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 OR52E1Q8NGJ3 308 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 OR8K5Q8NH50 307 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 CALML6Q8TD86 181 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 SNRNP27Q8WVK2 155 aaKnown RBP13.75□□□□□ -0.21
LIG1-218ENST00000599322 SKA2Q8WVK7 121 aaPredicted RBP13.75□□□□□ -0.21
LIG1-218ENST00000599322 WBP1Q96G27 269 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 SLC7A5P2Q9GIP4 190 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 C1GALT1Q9NS00 363 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 TREX1Q9NSU2 369 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 LNPEPQ9UIQ6 1025 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 PILRAQ9UKJ1 303 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 PCDHB3Q9Y5E6 796 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 SAR1BQ9Y6B6 198 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 MAD1L1Q9Y6D9 718 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 PRSS21Q9Y6M0 314 aa13.75□□□□□ -0.21
LIG1-218ENST00000599322 IGHV5-51A0A0C4DH38 117 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 SLC5A10A0PJK1 596 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 ZNF891A8MT65 544 aaPredicted RBP13.74□□□□□ -0.21
LIG1-218ENST00000599322 E5RI56 91 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 GOLGA8MH3BSY2 632 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 NDC80O14777 642 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 FGF5P12034 268 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 ARCN1P48444 511 aaKnown RBP13.74□□□□□ -0.21
LIG1-218ENST00000599322 EIF3BP55884 814 aaKnown RBP13.74□□□□□ -0.21
LIG1-218ENST00000599322 SH3BP2P78314 561 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 DHX34Q14147 1143 aaKnown RBP13.74□□□□□ -0.21
LIG1-218ENST00000599322 KIAA0930Q6ICG6 404 aaPredicted RBP13.74□□□□□ -0.21
LIG1-218ENST00000599322 NEPROQ6NW34 567 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 SYDE1Q6ZW31 735 aaPredicted RBP13.74□□□□□ -0.21
LIG1-218ENST00000599322 CFAP61Q8NHU2 1237 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 MAGEC3Q8TD91 643 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 CPT1BQ92523 772 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 ZNF669Q96BR6 464 aaPredicted RBP13.74□□□□□ -0.21
LIG1-218ENST00000599322 MFSD3Q96ES6 412 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 SLC41A2Q96JW4 573 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 PDLIM2Q96JY6 352 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 APMAPQ9HDC9 416 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 FGF21Q9NSA1 209 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 SIDT1Q9NXL6 827 aaKnown RBP13.74□□□□□ -0.21
LIG1-218ENST00000599322 SEMA5BQ9P283 1151 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 RNF14Q9UBS8 474 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 TMEM184BQ9Y519 407 aaPredicted RBP13.74□□□□□ -0.21
LIG1-218ENST00000599322 RPS6KL1Q9Y6S9 549 aa13.74□□□□□ -0.21
LIG1-218ENST00000599322 SETXQ7Z333 2677 aaKnown RBP13.74□□□□□ -0.21
LIG1-218ENST00000599322 FAM237BA0A1B0GVD1 139 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 TCRBV7S3A2A0A539 114 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 PIPSLA2A3N6 862 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 ZNF185O15231 689 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 SPAG6O75602 509 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 KIAA0754O94854 1291 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 SFTPCP11686 197 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 PLA2G2AP14555 144 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 CHRM3P20309 590 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 OGNP20774 298 aaKnown RBP13.73□□□□□ -0.21
LIG1-218ENST00000599322 RPS3P23396 243 aaKnown RBP eCLIP13.73□□□□□ -0.21
LIG1-218ENST00000599322 ABRQ12979 859 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 CES3Q6UWW8 571 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 UNC5DQ6UXZ4 953 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 LDB1Q86U70 411 aaPredicted RBP13.73□□□□□ -0.21
LIG1-218ENST00000599322 LMNTD2Q8IXW0 634 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 SLC22A15Q8IZD6 547 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 OR5K2Q8NHB8 316 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 PMEPA1Q969W9 287 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 SLC22A18Q96BI1 424 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 CAPZA3Q96KX2 299 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 CATSPER2Q96P56 530 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 KCND1Q9NSA2 647 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 OR6C2Q9NZP2 312 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 SERTAD3Q9UJW9 196 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 KCND3Q9UK17 655 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 POMT2Q9UKY4 750 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 PADI1Q9ULC6 663 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 SLC39A10Q9ULF5 831 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 PCDHGA4Q9Y5G9 962 aa13.73□□□□□ -0.21
LIG1-218ENST00000599322 ISM1B1AKI9 464 aa13.72□□□□□ -0.21
LIG1-218ENST00000599322 CCDC188H7C350 402 aa13.72□□□□□ -0.21
LIG1-218ENST00000599322 SMAPO00193 183 aa13.72□□□□□ -0.21
LIG1-218ENST00000599322 AVILO75366 819 aa13.72□□□□□ -0.21
LIG1-218ENST00000599322 ESR1P03372 595 aa13.72□□□□□ -0.21
LIG1-218ENST00000599322 ITGB2P05107 769 aa13.72□□□□□ -0.21
LIG1-218ENST00000599322 KLK3P07288 261 aaPredicted RBP13.72□□□□□ -0.21
LIG1-218ENST00000599322 ACADLP28330 430 aa13.72□□□□□ -0.21
LIG1-218ENST00000599322 PRDX3P30048 256 aaKnown RBP13.72□□□□□ -0.21
LIG1-218ENST00000599322 FMO4P31512 558 aa13.72□□□□□ -0.21
LIG1-218ENST00000599322 CCR7P32248 378 aa13.72□□□□□ -0.21
LIG1-218ENST00000599322 KPNA2P52292 529 aaKnown RBP13.72□□□□□ -0.21
LIG1-218ENST00000599322 TUBB4BP68371 445 aa13.72□□□□□ -0.21
LIG1-218ENST00000599322 TUBB2AQ13885 445 aa13.72□□□□□ -0.21
LIG1-218ENST00000599322 SEMA3AQ14563 771 aa13.72□□□□□ -0.21
LIG1-218ENST00000599322 TTLL9Q3SXZ7 439 aa13.72□□□□□ -0.21
LIG1-218ENST00000599322 ANKRD20A4Q4UJ75 823 aa13.72□□□□□ -0.21
LIG1-218ENST00000599322 PLEKHS1Q5SXH7 462 aa13.72□□□□□ -0.21
LIG1-218ENST00000599322 KIAA1614Q5VZ46 1190 aa13.72□□□□□ -0.21
LIG1-218ENST00000599322 CAND1Q86VP6 1230 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms