RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 CCL4P13236 92 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 POLR2CP19387 275 aaPredicted RBP13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 CAPZBP47756 277 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 KRT33BQ14525 404 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 EFTUD2Q15029 972 aaKnown RBP eCLIP13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 CLPPQ16740 277 aaPredicted RBP13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 KLHL38Q2WGJ6 581 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 C3orf38Q5JPI3 329 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 ZNF449Q6P9G9 518 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 FBXO38Q6PIJ6 1188 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 UNQ6494/PRO21346Q6UXR6 183 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 CYS1Q717R9 158 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 STRA8Q7Z7C7 330 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 GALNT7Q86SF2 657 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 ZC3HC1Q86WB0 502 aaKnown RBP13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 RASGRP3Q8IV61 690 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 TBC1D21Q8IYX1 336 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 ADGRF3Q8IZF5 1079 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 OR5K2Q8NHB8 316 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 LIN37Q96GY3 246 aaPredicted RBP13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 CNTNAP3BQ96NU0 1288 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 TGM7Q96PF1 710 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 CNTNAP3Q9BZ76 1288 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 NRSN2Q9GZP1 204 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 TWSG1Q9GZX9 223 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 TFB2MQ9H5Q4 396 aaKnown RBP13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 NINJ2Q9NZG7 142 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 EPHA6Q9UF33 1036 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 NFU1Q9UMS0 254 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 TDRKHQ9Y2W6 561 aaKnown RBP13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 HEBP2Q9Y5Z4 205 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 CCDC187A0A096LP49 1063 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 E5RI56 91 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 BTN3A1O00481 513 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 KPNA5O15131 536 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 ZW10O43264 779 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 MATN4O95460 622 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 C1orf105O95561 183 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 FAM153BP0C7A2 387 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 ITIH1P19827 911 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 MCM3P25205 808 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 NDUFS1P28331 727 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 DEKP35659 375 aaKnown RBP13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 BDKRB1P46663 353 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 LSSP48449 732 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 PPM1FP49593 454 aaPredicted RBP13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 GABREP78334 506 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 PLCL1Q15111 1095 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 TMED2Q15363 201 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 FAM153CQ494X1 144 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 HECTD2Q5U5R9 776 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 FOXR1Q6PIV2 292 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 PAQR3Q6TCH7 311 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 TMEM207Q6UWW9 146 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 FAM92BQ6ZTR7 304 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 RAB11FIP2Q7L804 512 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 CPNE9Q8IYJ1 553 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 FBF1Q8TES7 1133 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 LCN9Q8WX39 176 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 INPP5DQ92835 1189 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 PMEPA1Q969W9 287 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 IL17FQ96PD4 163 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 TRIT1Q9H3H1 467 aaKnown RBP13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 EPB41L1Q9H4G0 881 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 POLR1BQ9H9Y6 1135 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 HRASLS2Q9NWW9 162 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 OCIAD1Q9NX40 245 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 SPHK1Q9NYA1 384 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 ZFATQ9P243 1243 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 KLHL42Q9P2K6 505 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 MTO1Q9Y2Z2 717 aaKnown RBP13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 LOXL2Q9Y4K0 774 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 CEP295Q9C0D2 2601 aa13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 MN1Q10571 1320 aaPredicted RBP13.8□□□□□ -0.2
SHKBP1-217ENST00000598558 IGHV5-51A0A0C4DH38 117 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 BRINP1O60477 761 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 GSTA2P09210 222 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 MYBL2P10244 700 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 FGF3P11487 239 aaPredicted RBP13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 FDXRP22570 491 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 PEBP1P30086 187 aaKnown RBP13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 KPNA2P52292 529 aaKnown RBP13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 KBTBD12Q3ZCT8 623 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 DNTTIP2Q5QJE6 756 aaKnown RBP13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 IRGCQ6NXR0 463 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 PIWIL4Q7Z3Z4 852 aaKnown RBP13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 SLC26A11Q86WA9 606 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 PLXDC1Q8IUK5 500 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 RELL1Q8IUW5 271 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 FBXO39Q8N4B4 442 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 C2orf73Q8N5S3 287 aaPredicted RBP13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 GPATCH11Q8N954 259 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 LINC01555Q8NAE3 123 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 WDR36Q8NI36 951 aaKnown RBP13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 FLVCR1-AS1Q8TAF5 88 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 EEF1AKMT1Q8WVE0 214 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 DLG3Q92796 817 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 GRAMD1AQ96CP6 724 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 SLC46A1Q96NT5 459 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms