RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 PPP1R3AQ16821 1122 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 PFKFB4Q16877 469 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 UAP1L1Q3KQV9 507 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 SYTL3Q4VX76 610 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 USP39Q53GS9 565 aaKnown RBP13.17□□□□□ -0.3
VMP1-217ENST00000593168 CDKL4Q5MAI5 379 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 CGB2Q6NT52 195 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 DOK6Q6PKX4 331 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 C11orf96Q7Z7L8 435 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 LRRTM4Q86VH4 590 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 AMZ2Q86W34 360 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 VRK3Q8IV63 474 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 CFAP206Q8IYR0 622 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 SLC22A15Q8IZD6 547 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 OXR1Q8N573 874 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 PTGR2Q8N8N7 351 aaPredicted RBP13.17□□□□□ -0.3
VMP1-217ENST00000593168 HM13Q8TCT9 377 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 ASB11Q8WXH4 323 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 EXT2Q93063 718 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 PHF21BQ96EK2 531 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 SCARF2Q96GP6 870 aaPredicted RBP13.17□□□□□ -0.3
VMP1-217ENST00000593168 BMFQ96LC9 184 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 TMEM237Q96Q45 408 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 ELAC2Q9BQ52 826 aaKnown RBP13.17□□□□□ -0.3
VMP1-217ENST00000593168 TRMOQ9BU70 441 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 GPR174Q9BXC1 333 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 SLC12A9Q9BXP2 914 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 ERVK-6Q9BXR3 956 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 PCED1AQ9H1Q7 454 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 DPEP2Q9H4A9 486 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 ZNF395Q9H8N7 513 aaPredicted RBP13.17□□□□□ -0.3
VMP1-217ENST00000593168 COG4Q9H9E3 785 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 CYP4F12Q9HCS2 524 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 FZD3Q9NPG1 666 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 ASCC3Q8N3C0 2202 aaKnown RBP13.17□□□□□ -0.3
VMP1-217ENST00000593168 CEP192Q8TEP8 1941 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 PLXND1Q9Y4D7 1925 aa13.17□□□□□ -0.3
VMP1-217ENST00000593168 PKD1L2Q7Z442 2459 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 POM121BA6NF01 834 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 TMEM202A6NGA9 273 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 PRAMEF26H0Y7S4 382 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 KMOO15229 486 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 FFAR2O15552 330 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 SNX2O60749 519 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 MATN4O95460 622 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 CEACAM5P06731 702 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 TROVE2P10155 538 aaKnown RBP eCLIP13.16□□□□□ -0.3
VMP1-217ENST00000593168 VCLP18206 1134 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 ARRB2P32121 409 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 DHPSP49366 369 aaPredicted RBP13.16□□□□□ -0.3
VMP1-217ENST00000593168 CDKL1Q00532 357 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 UNC50Q53HI1 259 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 CFAP157Q5JU67 520 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 ZNF678Q5SXM1 525 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 CRTC3Q6UUV7 619 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 FRA10AC1Q70Z53 315 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 SPATA21Q7Z572 469 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 C11orf74Q86VG3 221 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 CCNYL1Q8N7R7 359 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 TMEM145Q8NBT3 493 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 PDPRQ8NCN5 879 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 ZCCHC14Q8WYQ9 949 aaKnown RBP13.16□□□□□ -0.3
VMP1-217ENST00000593168 PIGKQ92643 395 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 DLG3Q92796 817 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 BIRC7Q96CA5 298 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 SORT1Q99523 831 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 TRIM54Q9BYV2 358 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 TRIM55Q9BYV6 548 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 PARVBQ9HBI1 364 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 CD274Q9NZQ7 290 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 KLHL14Q9P2G3 628 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 HAO1Q9UJM8 370 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 ADAMTS6Q9UKP5 1117 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.16□□□□□ -0.3
VMP1-217ENST00000593168 NBEAQ8NFP9 2946 aa13.16□□□□□ -0.3
VMP1-217ENST00000593168 DMXL2Q8TDJ6 3036 aa13.15□□□□□ -0.3
VMP1-217ENST00000593168 H3BM21 787 aa13.15□□□□□ -0.3
VMP1-217ENST00000593168 HYAL3O43820 417 aaPredicted RBP13.15□□□□□ -0.3
VMP1-217ENST00000593168 PSIP1O75475 530 aaKnown RBP13.15□□□□□ -0.3
VMP1-217ENST00000593168 LYPLA1O75608 230 aaPredicted RBP13.15□□□□□ -0.3
VMP1-217ENST00000593168 SUPT7LO94864 414 aa13.15□□□□□ -0.3
VMP1-217ENST00000593168 FSBPO95073 299 aa13.15□□□□□ -0.3
VMP1-217ENST00000593168 HSPA4LO95757 839 aa13.15□□□□□ -0.3
VMP1-217ENST00000593168 S100BP04271 92 aaPredicted RBP13.15□□□□□ -0.3
VMP1-217ENST00000593168 HIST1H2AGP0C0S8 130 aaPredicted RBP13.15□□□□□ -0.3
VMP1-217ENST00000593168 HIST1H2ADP20671 130 aa13.15□□□□□ -0.3
VMP1-217ENST00000593168 CYP2A7P20853 494 aa13.15□□□□□ -0.3
VMP1-217ENST00000593168 HTR1BP28222 390 aa13.15□□□□□ -0.3
VMP1-217ENST00000593168 PBLDP30039 288 aaPredicted RBP13.15□□□□□ -0.3
VMP1-217ENST00000593168 CLDN2P57739 230 aa13.15□□□□□ -0.3
VMP1-217ENST00000593168 DMPKQ09013 629 aa13.15□□□□□ -0.3
VMP1-217ENST00000593168 PRKAA1Q13131 559 aa13.15□□□□□ -0.3
VMP1-217ENST00000593168 NFATC4Q14934 902 aa13.15□□□□□ -0.3
VMP1-217ENST00000593168 SETDB1Q15047 1291 aa13.15□□□□□ -0.3
VMP1-217ENST00000593168 PCBP2Q15366 365 aaKnown RBP eCLIP13.15□□□□□ -0.3
VMP1-217ENST00000593168 ARL13AQ5H913 290 aaPredicted RBP13.15□□□□□ -0.3
VMP1-217ENST00000593168 ANKS6Q68DC2 871 aa13.15□□□□□ -0.3
VMP1-217ENST00000593168 SULT1C3Q6IMI6 304 aa13.15□□□□□ -0.3
VMP1-217ENST00000593168 METTL2BQ6P1Q9 378 aaKnown RBP13.15□□□□□ -0.3
VMP1-217ENST00000593168 TTC23LQ6PF05 361 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms