RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 ZNF358Q9NW07 568 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 DLL3Q9NYJ7 618 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 PSMC3IPQ9P2W1 217 aaPredicted RBP9.05□□□□□ -0.96
VPS35-211ENST00000569950 TRMT6Q9UJA5 497 aaKnown RBP9.05□□□□□ -0.96
VPS35-211ENST00000569950 TSR3Q9UJK0 312 aaKnown RBP9.05□□□□□ -0.96
VPS35-211ENST00000569950 PADI4Q9UM07 663 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 SPTBP11277 2137 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 OR5K4A6NMS3 321 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 E5RI56 91 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 CDC7O00311 574 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 KPNA5O15131 536 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 ZBTB14O43829 449 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 SASH3O75995 380 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 INHBAP08476 426 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 SLC35G4P0C7Q5 338 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 CBSLP0DN79 551 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 ERGP11308 486 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 ENO3P13929 434 aaPredicted RBP9.04□□□□□ -0.96
VPS35-211ENST00000569950 CD1DP15813 335 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 CREB1P16220 341 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 GLB1P16278 677 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 CSRP1P21291 193 aaKnown RBP9.04□□□□□ -0.96
VPS35-211ENST00000569950 SAT1P21673 171 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 PEBP1P30086 187 aaKnown RBP9.04□□□□□ -0.96
VPS35-211ENST00000569950 CSF2RBP32927 897 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 CBSP35520 551 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 CCNFP41002 786 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 BDKRB1P46663 353 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 SERPINB9P50453 376 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 PDX1P52945 283 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 PPP1CAP62136 330 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 PLOD1Q02809 727 aaPredicted RBP9.04□□□□□ -0.96
VPS35-211ENST00000569950 ABRQ12979 859 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 USP10Q14694 798 aaKnown RBP9.04□□□□□ -0.96
VPS35-211ENST00000569950 CASP8Q14790 479 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 OR4D1Q15615 310 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 UNC5DQ6UXZ4 953 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 TMEM26Q6ZUK4 368 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 SPRED1Q7Z699 444 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 LINC01555Q8NAE3 123 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 FBXO15Q8NCQ5 510 aaPredicted RBP9.04□□□□□ -0.96
VPS35-211ENST00000569950 OR52E1Q8NGJ3 308 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 OR5K2Q8NHB8 316 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 GABPB2Q8TAK5 448 aaPredicted RBP9.04□□□□□ -0.96
VPS35-211ENST00000569950 KCTD4Q8WVF5 259 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 ANKRD7Q92527 254 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 CCDC74AQ96AQ1 378 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 CNDP2Q96KP4 475 aaKnown RBP9.04□□□□□ -0.96
VPS35-211ENST00000569950 TSSK1BQ9BXA7 367 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 UNKQ9C0B0 810 aaKnown RBP9.04□□□□□ -0.96
VPS35-211ENST00000569950 CCDC68Q9H2F9 335 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 KIR3DX1Q9H7L2 352 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 UCK1Q9HA47 277 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 IMP3Q9NV31 184 aaKnown RBP9.04□□□□□ -0.96
VPS35-211ENST00000569950 CIDEBQ9UHD4 219 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 ICKQ9UPZ9 632 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 FREM2Q5SZK8 3169 aa9.04□□□□□ -0.96
VPS35-211ENST00000569950 MDC1Q14676 2089 aaKnown RBP9.04□□□□□ -0.96
VPS35-211ENST00000569950 IGHV1OR21-1A0A087WYE8 117 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 UQCRHLA0A096LP55 91 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 A0A096LPK6 155 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 A0A1W2PPV9 198 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 LILRA5A6NI73 299 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 TARM1B6A8C7 271 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 MYO1CO00159 1063 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 NTN3O00634 580 aaPredicted RBP9.03□□□□□ -0.96
VPS35-211ENST00000569950 MAP2K7O14733 419 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 PRICKLE3O43900 615 aaPredicted RBP9.03□□□□□ -0.96
VPS35-211ENST00000569950 CDH16O75309 829 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 LDOC1O95751 146 aaPredicted RBP9.03□□□□□ -0.96
VPS35-211ENST00000569950 UQCRHP07919 91 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 SNRPAP09012 282 aaKnown RBP9.03□□□□□ -0.96
VPS35-211ENST00000569950 MTHFD2P13995 350 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 STMN1P16949 149 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 CKMT2P17540 419 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 CNTFP26441 200 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 CD1CP29017 333 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 SLC26A3P40879 764 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 SERPINB8P50452 374 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 OR1D5P58170 312 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 HHEXQ03014 270 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 SLC18A2Q05940 514 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 ILF2Q12905 390 aaKnown RBP9.03□□□□□ -0.96
VPS35-211ENST00000569950 PDAP1Q13442 181 aaKnown RBP9.03□□□□□ -0.96
VPS35-211ENST00000569950 SQSTM1Q13501 440 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 SUZ12Q15022 739 aaKnown RBP9.03□□□□□ -0.96
VPS35-211ENST00000569950 TMED2Q15363 201 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 NR0B2Q15466 257 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 RSPO4Q2I0M5 234 aaPredicted RBP9.03□□□□□ -0.96
VPS35-211ENST00000569950 MAP9Q49MG5 647 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 SYTL3Q4VX76 610 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 ZNF574Q6ZN55 896 aaPredicted RBP9.03□□□□□ -0.96
VPS35-211ENST00000569950 MBOAT1Q6ZNC8 495 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 CDHR3Q6ZTQ4 885 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 EFL1Q7Z2Z2 1120 aaKnown RBP9.03□□□□□ -0.96
VPS35-211ENST00000569950 ISCA2Q86U28 154 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 TRABD2AQ86V40 505 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 TBC1D21Q8IYX1 336 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 MAPK15Q8TD08 544 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 SETD7Q8WTS6 366 aaKnown RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms