RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 ART3Q13508 389 aa6.91□□□□□ -1.3
SMG1-215ENST00000568239 ENPP2Q13822 863 aa6.91□□□□□ -1.3
SMG1-215ENST00000568239 INPP5AQ14642 412 aa6.91□□□□□ -1.3
SMG1-215ENST00000568239 E2F5Q15329 346 aa6.91□□□□□ -1.3
SMG1-215ENST00000568239 CPSF6Q16630 551 aaKnown RBP eCLIP6.91□□□□□ -1.3
SMG1-215ENST00000568239 WSCD2Q2TBF2 565 aa6.91□□□□□ -1.3
SMG1-215ENST00000568239 PTCHD3Q3KNS1 767 aa6.91□□□□□ -1.3
SMG1-215ENST00000568239 DEFB107AQ8IZN7 70 aa6.91□□□□□ -1.3
SMG1-215ENST00000568239 FLCNQ8NFG4 579 aa6.91□□□□□ -1.3
SMG1-215ENST00000568239 OR9I1Q8NGQ6 314 aa6.91□□□□□ -1.3
SMG1-215ENST00000568239 CCDC124Q96CT7 223 aaKnown RBP6.91□□□□□ -1.3
SMG1-215ENST00000568239 RCN3Q96D15 328 aa6.91□□□□□ -1.3
SMG1-215ENST00000568239 MTFMTQ96DP5 389 aaKnown RBP6.91□□□□□ -1.3
SMG1-215ENST00000568239 MED8Q96G25 268 aa6.91□□□□□ -1.3
SMG1-215ENST00000568239 C1orf50Q9BV19 199 aa6.91□□□□□ -1.3
SMG1-215ENST00000568239 LGR4Q9BXB1 951 aa6.91□□□□□ -1.3
SMG1-215ENST00000568239 ACTR8Q9H981 624 aa6.91□□□□□ -1.3
SMG1-215ENST00000568239 KLQ9UEF7 1012 aa6.91□□□□□ -1.3
SMG1-215ENST00000568239 SLC22A14Q9Y267 594 aa6.91□□□□□ -1.3
SMG1-215ENST00000568239 DENND4AQ7Z401 1863 aa6.91□□□□□ -1.3
SMG1-215ENST00000568239 LOC730098B7Z3J9 87 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 EIF3FO00303 357 aaPredicted RBP6.9□□□□□ -1.3
SMG1-215ENST00000568239 NPC1O15118 1278 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 NARSO43776 548 aaKnown RBP6.9□□□□□ -1.3
SMG1-215ENST00000568239 ENTPD5O75356 428 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 SLCO2B1O94956 709 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 ATP6V1G2O95670 118 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 CATP04040 527 aaKnown RBP6.9□□□□□ -1.3
SMG1-215ENST00000568239 ALDOCP09972 364 aaKnown RBP6.9□□□□□ -1.3
SMG1-215ENST00000568239 MPC1LP0DKB6 136 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 ACADMP11310 421 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 LBPP18428 481 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 HNRNPH1P31943 449 aaKnown RBP6.9□□□□□ -1.3
SMG1-215ENST00000568239 HTR6P50406 440 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 DPTQ07507 201 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 NFE2L1Q14494 772 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 SQLEQ14534 574 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 SNCBQ16143 134 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 PNCKQ6P2M8 343 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 PAOXQ6QHF9 649 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 KIAA1324Q6UXG2 1013 aaKnown RBP6.9□□□□□ -1.3
SMG1-215ENST00000568239 ZNF765Q7L2R6 523 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 EFL1Q7Z2Z2 1120 aaKnown RBP6.9□□□□□ -1.3
SMG1-215ENST00000568239 RALGPS2Q86X27 583 aaPredicted RBP6.9□□□□□ -1.3
SMG1-215ENST00000568239 SCUBE1Q8IWY4 988 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 CPSF7Q8N684 471 aaKnown RBP6.9□□□□□ -1.3
SMG1-215ENST00000568239 FNDC5Q8NAU1 212 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 RPLP0P6Q8NHW5 317 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 RP9Q8TA86 221 aaKnown RBP6.9□□□□□ -1.3
SMG1-215ENST00000568239 SIPA1Q96FS4 1042 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 NPAS2Q99743 824 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 SLC32A1Q9H598 525 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 PFDN4Q9NQP4 134 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 MBNL1Q9NR56 388 aaKnown RBP6.9□□□□□ -1.3
SMG1-215ENST00000568239 PACSIN3Q9UKS6 424 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 NDRG2Q9UN36 371 aaKnown RBP6.9□□□□□ -1.3
SMG1-215ENST00000568239 RNF11Q9Y3C5 154 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 A0A1W2PQU0 124 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 ARHGEF33A8MVX0 844 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 H0Y3Z8 333 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 SLC31A1O15431 190 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 PDE5AO76074 875 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 ENO2P09104 434 aaPredicted RBP6.9□□□□□ -1.3
SMG1-215ENST00000568239 DIO3P55073 304 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 CDK3Q00526 305 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 NR6A1Q15406 480 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 CCSMST1Q4G0I0 132 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 ATP6AP1LQ52LC2 224 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 SLC44A4Q53GD3 710 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 ZNF547Q8IVP9 402 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 PPFIBP2Q8ND30 876 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 SPDYE1Q8NFV5 336 aaPredicted RBP6.9□□□□□ -1.3
SMG1-215ENST00000568239 SLC45A3Q96JT2 553 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 C1orf21Q9H246 121 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 DENND2DQ9H6A0 471 aaPredicted RBP6.9□□□□□ -1.3
SMG1-215ENST00000568239 FZD3Q9NPG1 666 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 PSMD13Q9UNM6 376 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 USP34Q70CQ2 3546 aa6.9□□□□□ -1.3
SMG1-215ENST00000568239 A0A1W2PQF6 199 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 SLC5A10A0PJK1 596 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 GFYI3L273 518 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 SCAMP1O15126 338 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 CIB2O75838 187 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 GSTM1P09488 218 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 ITGAXP20702 1163 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 DRD1P21728 446 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 PRDX6P30041 224 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 CPOXP36551 454 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 HALP42357 657 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 HNMTP50135 292 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 GSTM4Q03013 218 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 TRAF3Q13114 568 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 SP140Q13342 867 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 GBX1Q14549 363 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 KPNB1Q14974 876 aaKnown RBP6.9□□□□□ -1.31
SMG1-215ENST00000568239 ABRAXAS2Q15018 415 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 IMPG1Q17R60 797 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 LRIT3Q3SXY7 679 aa6.9□□□□□ -1.31
SMG1-215ENST00000568239 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.9□□□□□ -1.31
SMG1-215ENST00000568239 TMEM31Q5JXX7 168 aa6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms