RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 C2CD6Q53TS8 623 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 C20orf194Q5TEA3 1177 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 LYSMD4Q5XG99 296 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 INTS8Q75QN2 995 aaKnown RBP2.5□□□□□ -2.01
VPS35-207ENST00000568191 COMMD2Q86X83 199 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 HOGA1Q86XE5 327 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 CDC20BQ86Y33 519 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 SCYL3Q8IZE3 742 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 OR2T11Q8NH01 316 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 TDRD7Q8NHU6 1098 aaKnown RBP2.5□□□□□ -2.01
VPS35-207ENST00000568191 RNF128Q8TEB7 428 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 UCMAQ8WVF2 138 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 PKP2Q99959 881 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 PANK2Q9BZ23 570 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 RTN4RQ9BZR6 473 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 LAT2Q9GZY6 243 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 MIS12Q9H081 205 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 SMARCAD1Q9H4L7 1026 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 RNF186Q9NXI6 227 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 TMEM181Q9P2C4 612 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 ORC3Q9UBD5 711 aaPredicted RBP2.5□□□□□ -2.01
VPS35-207ENST00000568191 AASSQ9UDR5 926 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 GRIP1Q9Y3R0 1128 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 RUSC2Q8N2Y8 1516 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 PRSS51A0A1B0GVH4 220 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 B4E171 279 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 KHDRBS3O75525 346 aaKnown RBP2.49□□□□□ -2.01
VPS35-207ENST00000568191 RSL1D1O76021 490 aaKnown RBP2.49□□□□□ -2.01
VPS35-207ENST00000568191 DFFBO76075 338 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 TPPPO94811 219 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 SCGB1D1O95968 90 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 RB1P06400 928 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 CLTBP09497 229 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 TSPAN7P41732 249 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 CDH8P55286 799 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 NR1D2Q14995 579 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 NECTIN1Q15223 517 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 SNAI3Q3KNW1 292 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 HSP90AB4PQ58FF6 505 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 HAUS3Q68CZ6 603 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 SUSD1Q6UWL2 747 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 CFAP77Q6ZQR2 320 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 IKBIPQ70UQ0 350 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 PXKQ7Z7A4 578 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 PIGZQ86VD9 579 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 CERS3Q8IU89 383 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 ZNF843Q8N446 348 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 PAPD5Q8NDF8 572 aaKnown RBP2.49□□□□□ -2.01
VPS35-207ENST00000568191 KBTBD8Q8NFY9 601 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 OR5AP2Q8NGF4 316 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 CCDC107Q8WV48 283 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 RASL10AQ92737 203 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 NSMCE3Q96MG7 304 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 LRRC61Q9BV99 259 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 ITPAQ9BY32 194 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 WWTR1Q9GZV5 400 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 MBNL1Q9NR56 388 aaKnown RBP2.49□□□□□ -2.01
VPS35-207ENST00000568191 FGF21Q9NSA1 209 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 OLA1Q9NTK5 396 aaKnown RBP2.49□□□□□ -2.01
VPS35-207ENST00000568191 SPHK1Q9NYA1 384 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 TAS2R14Q9NYV8 317 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 OR6C2Q9NZP2 312 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 FBXL17Q9UF56 701 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 ASIC3Q9UHC3 531 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 PPP1R3CQ9UQK1 317 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 CSAG2Q9Y5P2 127 aa2.49□□□□□ -2.01
VPS35-207ENST00000568191 FRMD3A2A2Y4 597 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 ANKRD61A6NGH8 418 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 A8MZ25 164 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 GAPDHSO14556 408 aaPredicted RBP2.48□□□□□ -2.01
VPS35-207ENST00000568191 EPHB6O15197 1021 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 RNASEH1O60930 286 aaKnown RBP2.48□□□□□ -2.01
VPS35-207ENST00000568191 MBD4O95243 580 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 ACADMP11310 421 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 LAMP2P13473 410 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 GJA1P17302 382 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 CA4P22748 312 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 MAN1A1P33908 653 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 ARSEP51690 589 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 CYCSP99999 105 aaKnown RBP2.48□□□□□ -2.01
VPS35-207ENST00000568191 SETQ01105 290 aaPredicted RBP2.48□□□□□ -2.01
VPS35-207ENST00000568191 DRP2Q13474 957 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 MTHFSDQ2M296 383 aaKnown RBP2.48□□□□□ -2.01
VPS35-207ENST00000568191 ASTE1Q2TB18 679 aaPredicted RBP2.48□□□□□ -2.01
VPS35-207ENST00000568191 FAM98BQ52LJ0 330 aaKnown RBP2.48□□□□□ -2.01
VPS35-207ENST00000568191 SNX30Q5VWJ9 437 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 FAM180BQ6P0A1 224 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 PAQR6Q6TCH4 344 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 TMCO3Q6UWJ1 677 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 CHST9Q7L1S5 443 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 CFAP206Q8IYR0 622 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 OR10G8Q8NGN5 311 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 OR4C3Q8NH37 302 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 MOSPD2Q8NHP6 518 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 OR6C1Q96RD1 312 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 SRSF8Q9BRL6 282 aaKnown RBP2.48□□□□□ -2.01
VPS35-207ENST00000568191 SDR39U1Q9NRG7 319 aaPredicted RBP2.48□□□□□ -2.01
VPS35-207ENST00000568191 KRT84Q9NSB2 600 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 FAM120CQ9NX05 1096 aaKnown RBP2.48□□□□□ -2.01
VPS35-207ENST00000568191 MAN1B1Q9UKM7 699 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms