RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 WWP1Q9H0M0 922 aa29.85■■■□□ 2.37
CTCF-203ENST00000566078 WWOXQ9NZC7 414 aa29.85■■■□□ 2.37
CTCF-203ENST00000566078 ACSL5Q9ULC5 683 aa29.85■■■□□ 2.37
CTCF-203ENST00000566078 RPS17P08708 135 aaKnown RBP29.84■■■□□ 2.37
CTCF-203ENST00000566078 ANXA5P08758 320 aa29.84■■■□□ 2.37
CTCF-203ENST00000566078 SLC35G4P0C7Q5 338 aa29.84■■■□□ 2.37
CTCF-203ENST00000566078 ACADLP28330 430 aa29.84■■■□□ 2.37
CTCF-203ENST00000566078 ARL13AQ5H913 290 aaPredicted RBP29.84■■■□□ 2.37
CTCF-203ENST00000566078 SULT1C3Q6IMI6 304 aa29.84■■■□□ 2.37
CTCF-203ENST00000566078 HID1Q8IV36 788 aa29.84■■■□□ 2.37
CTCF-203ENST00000566078 SPDYE1Q8NFV5 336 aaPredicted RBP29.84■■■□□ 2.37
CTCF-203ENST00000566078 ESAMQ96AP7 390 aa29.84■■■□□ 2.37
CTCF-203ENST00000566078 RHBDF1Q96CC6 855 aa29.84■■■□□ 2.37
CTCF-203ENST00000566078 GRAMD1AQ96CP6 724 aa29.84■■■□□ 2.37
CTCF-203ENST00000566078 THOC1Q96FV9 657 aaKnown RBP29.84■■■□□ 2.37
CTCF-203ENST00000566078 RMDN2Q96LZ7 410 aa29.84■■■□□ 2.37
CTCF-203ENST00000566078 ZDHHC5Q9C0B5 715 aa29.84■■■□□ 2.37
CTCF-203ENST00000566078 PTBP2Q9UKA9 531 aaKnown RBP29.84■■■□□ 2.37
CTCF-203ENST00000566078 RPL10P27635 214 aaKnown RBP29.83■■■□□ 2.37
CTCF-203ENST00000566078 AP1S2P56377 157 aa29.83■■■□□ 2.37
CTCF-203ENST00000566078 ANKS6Q68DC2 871 aa29.83■■■□□ 2.37
CTCF-203ENST00000566078 ARMCX6Q7L4S7 300 aa29.83■■■□□ 2.37
CTCF-203ENST00000566078 LONP2Q86WA8 852 aa29.83■■■□□ 2.37
CTCF-203ENST00000566078 MAML2Q8IZL2 1156 aaPredicted RBP29.83■■■□□ 2.37
CTCF-203ENST00000566078 LSMEM2Q8N112 164 aa29.83■■■□□ 2.37
CTCF-203ENST00000566078 C1QTNF3Q9BXJ4 246 aa29.83■■■□□ 2.37
CTCF-203ENST00000566078 DUSP15Q9H1R2 295 aaPredicted RBP29.83■■■□□ 2.37
CTCF-203ENST00000566078 MARCOQ9UEW3 520 aaPredicted RBP29.83■■■□□ 2.37
CTCF-203ENST00000566078 ASB1Q9Y576 335 aa29.83■■■□□ 2.37
CTCF-203ENST00000566078 SPTY2D1-AS1A0A0U1RR47 76 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 KRT87PA6NCN2 255 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 PRR19A6NJB7 356 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 TAPBPO15533 448 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 RASGRP1O95267 797 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 CD38P28907 300 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 CLCNKAP51800 687 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 CDKL4Q5MAI5 379 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 UNC5DQ6UXZ4 953 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 MFSD2AQ8NA29 543 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 TMEM79Q9BSE2 394 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 NPHS2Q9NP85 383 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 TNPO3Q9Y5L0 923 aaKnown RBP29.82■■■□□ 2.36
CTCF-203ENST00000566078 ST14Q9Y5Y6 855 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 IFRD1O00458 451 aaPredicted RBP29.82■■■□□ 2.36
CTCF-203ENST00000566078 C1orf105O95561 183 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 TROVE2P10155 538 aaKnown RBP eCLIP29.82■■■□□ 2.36
CTCF-203ENST00000566078 KITP10721 976 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 IDSP22304 550 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 HSPA7P48741 367 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 RACK1P63244 317 aaKnown RBP29.82■■■□□ 2.36
CTCF-203ENST00000566078 FZD2Q14332 565 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 TCEA2Q15560 299 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 CCSMST1Q4G0I0 132 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 LAYNQ6UX15 382 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 SPATA21Q7Z572 469 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 ZNF781Q8N8C0 355 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 UBTD2Q8WUN7 234 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 NSUN5Q96P11 429 aaKnown RBP29.82■■■□□ 2.36
CTCF-203ENST00000566078 SHCBP1LQ9BZQ2 653 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 TM9SF3Q9HD45 589 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 PCTPQ9UKL6 214 aa29.82■■■□□ 2.36
CTCF-203ENST00000566078 A0A1W2PR77 199 aa29.81■■■□□ 2.36
CTCF-203ENST00000566078 WNT1P04628 370 aa29.81■■■□□ 2.36
CTCF-203ENST00000566078 TSPAN8P19075 237 aa29.81■■■□□ 2.36
CTCF-203ENST00000566078 MPSTP25325 297 aa29.81■■■□□ 2.36
CTCF-203ENST00000566078 CDH13P55290 713 aa29.81■■■□□ 2.36
CTCF-203ENST00000566078 CTBSQ01459 385 aa29.81■■■□□ 2.36
CTCF-203ENST00000566078 EIF2B5Q13144 721 aaKnown RBP29.81■■■□□ 2.36
CTCF-203ENST00000566078 LRP8Q14114 963 aa29.81■■■□□ 2.36
CTCF-203ENST00000566078 PCBP2Q15366 365 aaKnown RBP eCLIP29.81■■■□□ 2.36
CTCF-203ENST00000566078 DCP2Q8IU60 420 aaKnown RBP29.81■■■□□ 2.36
CTCF-203ENST00000566078 RGL4Q8IZJ4 473 aa29.81■■■□□ 2.36
CTCF-203ENST00000566078 TCAIMQ8N3R3 496 aa29.81■■■□□ 2.36
CTCF-203ENST00000566078 DTWD2Q8NBA8 298 aa29.81■■■□□ 2.36
CTCF-203ENST00000566078 ZNF483Q8TF39 744 aaPredicted RBP29.81■■■□□ 2.36
CTCF-203ENST00000566078 TRMOQ9BU70 441 aa29.81■■■□□ 2.36
CTCF-203ENST00000566078 TMEM168Q9H0V1 697 aa29.81■■■□□ 2.36
CTCF-203ENST00000566078 ASF1AQ9Y294 204 aa29.81■■■□□ 2.36
CTCF-203ENST00000566078 RAP2CQ9Y3L5 183 aa29.81■■■□□ 2.36
CTCF-203ENST00000566078 DGKBQ9Y6T7 804 aa29.81■■■□□ 2.36
CTCF-203ENST00000566078 TNFP01375 233 aa29.8■■■□□ 2.36
CTCF-203ENST00000566078 GKAP1Q5VSY0 366 aaPredicted RBP29.8■■■□□ 2.36
CTCF-203ENST00000566078 LPCAT2Q7L5N7 544 aa29.8■■■□□ 2.36
CTCF-203ENST00000566078 PIGWQ7Z7B1 504 aa29.8■■■□□ 2.36
CTCF-203ENST00000566078 FBXO15Q8NCQ5 510 aaPredicted RBP29.8■■■□□ 2.36
CTCF-203ENST00000566078 TRIM55Q9BYV6 548 aa29.8■■■□□ 2.36
CTCF-203ENST00000566078 EML4Q9HC35 981 aaKnown RBP29.8■■■□□ 2.36
CTCF-203ENST00000566078 PNPOQ9NVS9 261 aa29.8■■■□□ 2.36
CTCF-203ENST00000566078 CIDEBQ9UHD4 219 aa29.8■■■□□ 2.36
CTCF-203ENST00000566078 WDR37Q9Y2I8 494 aa29.8■■■□□ 2.36
CTCF-203ENST00000566078 ARHGEF17Q96PE2 2063 aaPredicted RBP29.8■■■□□ 2.36
CTCF-203ENST00000566078 E2F3O00716 465 aa29.79■■■□□ 2.36
CTCF-203ENST00000566078 SNX3O60493 162 aa29.79■■■□□ 2.36
CTCF-203ENST00000566078 SNUPNO95149 360 aaKnown RBP29.79■■■□□ 2.36
CTCF-203ENST00000566078 TGDSO95455 350 aa29.79■■■□□ 2.36
CTCF-203ENST00000566078 HNMTP50135 292 aa29.79■■■□□ 2.36
CTCF-203ENST00000566078 NAA20P61599 178 aa29.79■■■□□ 2.36
CTCF-203ENST00000566078 PRKAA1Q13131 559 aa29.79■■■□□ 2.36
CTCF-203ENST00000566078 WDR45BQ5MNZ6 344 aa29.79■■■□□ 2.36
CTCF-203ENST00000566078 IQCHQ86VS3 1027 aa29.79■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms