RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 TAS2R42Q7RTR8 314 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 FAM71DQ8N9W8 422 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 TTC13Q8NBP0 860 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 STYXQ8WUJ0 223 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 CLIP3Q96DZ5 547 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 MRFAP1L1Q96HT8 127 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 DPH2Q9BQC3 489 aaPredicted RBP16.59■□□□□ 0.25
CLN3-216ENST00000565316 ACSS2Q9NR19 701 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 SERTAD3Q9UJW9 196 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 SNX7Q9UNH6 387 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 PCDHGB7Q9Y5F8 929 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 TEX15Q9BXT5 2789 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 C2orf74A8MZ97 194 aa16.58■□□□□ 0.24
CLN3-216ENST00000565316 LIN7AO14910 233 aaPredicted RBP16.58■□□□□ 0.24
CLN3-216ENST00000565316 MAP3K7O43318 606 aa16.58■□□□□ 0.24
CLN3-216ENST00000565316 AP2A1O95782 977 aa16.58■□□□□ 0.24
CLN3-216ENST00000565316 GP1BBP13224 206 aa16.58■□□□□ 0.24
CLN3-216ENST00000565316 CYP2A7P20853 494 aa16.58■□□□□ 0.24
CLN3-216ENST00000565316 LMAN1P49257 510 aa16.58■□□□□ 0.24
CLN3-216ENST00000565316 VAV2P52735 878 aa16.58■□□□□ 0.24
CLN3-216ENST00000565316 ITGA1P56199 1179 aa16.58■□□□□ 0.24
CLN3-216ENST00000565316 CHAF1BQ13112 559 aa16.58■□□□□ 0.24
CLN3-216ENST00000565316 ZNF385CQ66K41 422 aaPredicted RBP16.58■□□□□ 0.24
CLN3-216ENST00000565316 CDHR3Q6ZTQ4 885 aa16.58■□□□□ 0.24
CLN3-216ENST00000565316 SYTL1Q8IYJ3 562 aa16.58■□□□□ 0.24
CLN3-216ENST00000565316 SLC35B2Q8TB61 432 aa16.58■□□□□ 0.24
CLN3-216ENST00000565316 PSMG3-AS1Q96PY0 264 aa16.58■□□□□ 0.24
CLN3-216ENST00000565316 CHRNA10Q9GZZ6 450 aa16.58■□□□□ 0.24
CLN3-216ENST00000565316 XKR8Q9H6D3 395 aa16.58■□□□□ 0.24
CLN3-216ENST00000565316 ACTR10Q9NZ32 417 aa16.58■□□□□ 0.24
CLN3-216ENST00000565316 SPTBN1Q01082 2364 aaKnown RBP16.58■□□□□ 0.24
CLN3-216ENST00000565316 NBPF19A0A087WUL8 3843 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 GOLGA6L9A6NEM1 432 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 PSMD3O43242 534 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 PVRP15151 417 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 ACADLP28330 430 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 NSG1P42857 185 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 PRKG2Q13237 762 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 ITIH4Q14624 930 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 POU6F1Q14863 301 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 P3H1Q32P28 736 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 FAM69BQ5VUD6 431 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 SPESP1Q6UW49 350 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 PACS1Q6VY07 963 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 GALNT11Q8NCW6 608 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 ACRBPQ8NEB7 543 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 HGH1Q9BTY7 390 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 SMARCAL1Q9NZC9 954 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 AMFRQ9UKV5 643 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 ICKQ9UPZ9 632 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 R3HDM2Q9Y2K5 976 aaKnown RBP16.57■□□□□ 0.24
CLN3-216ENST00000565316 PRSS21Q9Y6M0 314 aa16.57■□□□□ 0.24
CLN3-216ENST00000565316 UNC79Q9P2D8 2635 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 TTLL8A6PVC2 850 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 MIF4GDA9UHW6 222 aaKnown RBP16.56■□□□□ 0.24
CLN3-216ENST00000565316 E7EQ34 232 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 H3BMH7 237 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 QSOX1O00391 747 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 ZNF749O43361 778 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 SORBS2O94875 1100 aaKnown RBP16.56■□□□□ 0.24
CLN3-216ENST00000565316 TMEM63AO94886 807 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 HBQ1P09105 142 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 TPBGLP0DKB5 382 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 GABRA4P48169 554 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 GDF10P55107 478 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 NCF4Q15080 339 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 NADK2Q4G0N4 442 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 PEX26Q7Z412 305 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 ZBTB2Q8N680 514 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 UBL4BQ8N7F7 174 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 GLIS1Q8NBF1 620 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 OR5AR1Q8NGP9 310 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 FLVCR1-AS1Q8TAF5 88 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 CPT1CQ8TCG5 803 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.56■□□□□ 0.24
CLN3-216ENST00000565316 KLHL25Q9H0H3 589 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 ZNF451Q9Y4E5 1061 aa16.56■□□□□ 0.24
CLN3-216ENST00000565316 SLC5A10A0PJK1 596 aa16.55■□□□□ 0.24
CLN3-216ENST00000565316 BHMG1C9JSJ3 638 aaPredicted RBP16.55■□□□□ 0.24
CLN3-216ENST00000565316 MSNP26038 577 aaKnown RBP16.55■□□□□ 0.24
CLN3-216ENST00000565316 FOXN2P32314 431 aa16.55■□□□□ 0.24
CLN3-216ENST00000565316 SHMT2P34897 504 aa16.55■□□□□ 0.24
CLN3-216ENST00000565316 PLOD1Q02809 727 aaPredicted RBP16.55■□□□□ 0.24
CLN3-216ENST00000565316 ZIC1Q15915 447 aa16.55■□□□□ 0.24
CLN3-216ENST00000565316 PTCHD3Q3KNS1 767 aa16.55■□□□□ 0.24
CLN3-216ENST00000565316 UNC5AQ6ZN44 842 aa16.55■□□□□ 0.24
CLN3-216ENST00000565316 MED25Q71SY5 747 aa16.55■□□□□ 0.24
CLN3-216ENST00000565316 LINC00523Q86TU6 105 aa16.55■□□□□ 0.24
CLN3-216ENST00000565316 HPS6Q86YV9 775 aa16.55■□□□□ 0.24
CLN3-216ENST00000565316 TBC1D21Q8IYX1 336 aa16.55■□□□□ 0.24
CLN3-216ENST00000565316 TMEM102Q8N9M5 508 aaPredicted RBP16.55■□□□□ 0.24
CLN3-216ENST00000565316 TCTN2Q96GX1 697 aa16.55■□□□□ 0.24
CLN3-216ENST00000565316 OR2A14Q96R47 310 aa16.55■□□□□ 0.24
CLN3-216ENST00000565316 TMEM121Q9BTD3 319 aa16.55■□□□□ 0.24
CLN3-216ENST00000565316 DHRS4Q9BTZ2 278 aa16.55■□□□□ 0.24
CLN3-216ENST00000565316 FAM60AQ9NP50 221 aa16.55■□□□□ 0.24
CLN3-216ENST00000565316 PIH1D1Q9NWS0 290 aaKnown RBP16.55■□□□□ 0.24
CLN3-216ENST00000565316 OR6C2Q9NZP2 312 aa16.55■□□□□ 0.24
CLN3-216ENST00000565316 POLG2Q9UHN1 485 aa16.55■□□□□ 0.24
CLN3-216ENST00000565316 MAP4K5Q9Y4K4 846 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms