RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 CHST8Q9H2A9 424 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 MLXIPLQ9NP71 852 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 SMARCAL1Q9NZC9 954 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 PRSS21Q9Y6M0 314 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 SLC5A10A0PJK1 596 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 HEATR9A2RTY3 570 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 GSAPA4D1B5 854 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 LIASO43766 372 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 FTH1P02794 183 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 CAPN1P07384 714 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 FDFT1P37268 417 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 RPS18P62269 152 aaKnown RBP16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 LYPLAL1Q5VWZ2 237 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 ASB18Q6ZVZ8 466 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 TBC1D21Q8IYX1 336 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 OR52K1Q8NGK4 314 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 OR13J1Q8NGT2 312 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 DPH2Q9BQC3 489 aaPredicted RBP16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 PCMTD2Q9NV79 361 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 PIH1D1Q9NWS0 290 aaKnown RBP16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 ACTR10Q9NZ32 417 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 POLG2Q9UHN1 485 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 SERTAD3Q9UJW9 196 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 ICKQ9UPZ9 632 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 PCDHGA9Q9Y5G4 932 aaKnown RBP16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 FLNCQ14315 2725 aa16.68■□□□□ 0.26
VPS9D1-203ENST00000563798 HECTD1Q9ULT8 2610 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 CCDC162PA2VCL2 907 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 CLEC18AA5D8T8 446 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 BHMG1C9JSJ3 638 aaPredicted RBP16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 MAP3K7O43318 606 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 SHMT2P34897 504 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 CD97P48960 835 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 IL10RAQ13651 578 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 PRAMEF17Q5VTA0 474 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 PAPD7Q5XG87 772 aaKnown RBP16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 LCN10Q6JVE6 187 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 SPESP1Q6UW49 350 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 CLEC18BQ6UXF7 455 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 CLEC18CQ8NCF0 446 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 ATG4AQ8WYN0 398 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 NRTNQ99748 197 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 HGH1Q9BTY7 390 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 TRIM55Q9BYV6 548 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 ETNK1Q9HBU6 452 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 OR6C2Q9NZP2 312 aa16.67■□□□□ 0.26
VPS9D1-203ENST00000563798 TMEM150CB9EJG8 249 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 H3BMH7 237 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 GAS8O95995 478 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 PDGFAP04085 211 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 HBQ1P09105 142 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 OR56A5P0C7T3 313 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 TPBGLP0DKB5 382 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 NR1D1P20393 614 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 ADRA1DP25100 572 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 GABRA4P48169 554 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 PRKG2Q13237 762 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 TSTD2Q5T7W7 516 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 ZNF385CQ66K41 422 aaPredicted RBP16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 AFTPHQ6ULP2 937 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 FAM198BQ6UWH4 519 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 UNC5AQ6ZN44 842 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 CDHR3Q6ZTQ4 885 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 NLRP9Q7RTR0 991 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 SLC13A5Q86YT5 568 aaPredicted RBP16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 DNAAF3Q8N9W5 541 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 TEX19Q8NA77 164 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 OR5AR1Q8NGP9 310 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 OR5K2Q8NHB8 316 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 FLVCR1-AS1Q8TAF5 88 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 ELMO1Q92556 727 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 HDAC10Q969S8 669 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 MIB2Q96AX9 1013 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 TCTN2Q96GX1 697 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 TTC1Q99614 292 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 XKR8Q9H6D3 395 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 ACTR5Q9H9F9 607 aaPredicted RBP16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 CASS4Q9NQ75 786 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 TCFL5Q9UL49 500 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 ASF1AQ9Y294 204 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 PIKFYVEQ9Y2I7 2098 aa16.66■□□□□ 0.26
VPS9D1-203ENST00000563798 OR51F1A6NGY5 319 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 F8W8V4 182 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 CEACAM4O75871 244 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 DNAJB5O75953 348 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 PVRP15151 417 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 UGT2B7P16662 529 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 CYP2A7P20853 494 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 LMAN1P49257 510 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 ITGA1P56199 1179 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 IGFBP7Q16270 282 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 CCDC38Q502W7 563 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 COLEC12Q5KU26 742 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 SEL1L2Q5TEA6 688 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 ZNF534Q76KX8 674 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 SYTL1Q8IYJ3 562 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 TAB3Q8N5C8 712 aaPredicted RBP16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 ENDOVQ8N8Q3 282 aaKnown RBP16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 CLIP3Q96DZ5 547 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms