RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 ZNF408Q9H9D4 720 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 TIGARQ9NQ88 270 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 CD300AQ9UGN4 299 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 ANKRD12Q6UB98 2062 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 CXCR6O00574 342 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 DYNC1LI2O43237 492 aaPredicted RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 HSPA12AO43301 675 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 CCNB2O95067 398 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 NKX6-1P78426 367 aaPredicted RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 EIF4HQ15056 248 aaKnown RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 SMYD5Q6GMV2 418 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 NANOGP8Q6NSW7 305 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 PARP16Q8N5Y8 322 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 FAM156AQ8NDB6 213 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 KIAA1143Q96AT1 154 aaPredicted RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 IL1RAPQ9NPH3 570 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 NIT2Q9NQR4 276 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 ZFR2Q9UPR6 939 aaKnown RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 RIC1Q4ADV7 1423 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 LYRM1O43325 122 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 RLN2P04090 185 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 UBBP0CG47 229 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 UBCP0CG48 685 aaKnown RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 PIM1P11309 404 aaPredicted RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 CPB1P15086 417 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 IL7RP16871 459 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 FPR1P21462 350 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 PAX6P26367 422 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 PCSK6P29122 969 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 CEBPGP53567 150 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 RPS27AP62979 156 aaKnown RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 UBA52P62987 128 aaKnown RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 TSTA3Q13630 321 aaPredicted RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 CRTC2Q53ET0 693 aaPredicted RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 HYIQ5T013 277 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 METAP1DQ6UB28 335 aaPredicted RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 LINC00469Q8N7U9 141 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 TTLQ8NG68 377 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 DYNLL2Q96FJ2 89 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 OR2M2Q96R28 347 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 TBL1YQ9BQ87 522 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 ZIM2Q9NZV7 527 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 DLGAP4Q9Y2H0 992 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 TRAV20A0A0B4J274 112 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 FOXO6A8MYZ6 492 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 CREBL2O60519 120 aaPredicted RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 SPATA31D3P0C874 917 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 HOXB1P14653 301 aaPredicted RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 UGT2B10P36537 528 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 POU6F2P78424 691 aaPredicted RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 LRIT3Q3SXY7 679 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 OR2T5Q6IEZ7 315 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 GADL1Q6ZQY3 521 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 SPATA31D4Q6ZUB0 917 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 CEP97Q8IW35 865 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 CDK20Q8IZL9 346 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 ZNF548Q8NEK5 533 aaPredicted RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 OR2T29Q8NH02 315 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 HERVK_113Q902F9 699 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 MAPKAP1Q9BPZ7 522 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 ZNF251Q9BRH9 671 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 MROH8Q9H579 483 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 COMMD3Q9UBI1 195 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 TRPV2Q9Y5S1 764 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 PLA2G6O60733 806 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 OAZ2O95190 189 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 FCER2P06734 321 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 CPNE9Q8IYJ1 553 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 WACQ9BTA9 647 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 TARS2Q9BW92 718 aaKnown RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 POLR2J2Q9GZM3 115 aaKnown RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 SLC38A1Q9H2H9 487 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 COQ3Q9NZJ6 369 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 NARFQ9UHQ1 456 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 FKBP7Q9Y680 259 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 LRRC14BA6NHZ5 514 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 OTCP00480 354 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 LCKP06239 509 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 ADRB1P08588 477 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 MMP12P39900 470 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 OMPP47874 163 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 PSMA6P60900 246 aaKnown RBP6.16□□□□□ -1.42
CLK3-212ENST00000563418 BLOC1S1P78537 153 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 LCP2Q13094 533 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 QRICH1Q2TAL8 776 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 PROX2Q3B8N5 592 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 USP41Q3LFD5 358 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 HIST2H2AA3Q6FI13 130 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 DSG4Q86SJ6 1040 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 PHTF2Q8N3S3 785 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 FUZQ9BT04 418 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 ERVK-6Q9BXR3 956 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 BEX2Q9BXY8 128 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 RGCCQ9H4X1 137 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 ERVK-18Q9QC07 812 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 DAGLAQ9Y4D2 1042 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 RRN3P2A6NIE6 340 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 WASH4PA8MWX3 477 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 CKBP12277 381 aa6.16□□□□□ -1.42
CLK3-212ENST00000563418 HSD17B1P14061 328 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms