RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 DNAAF2Q9NVR5 837 aaKnown RBP7.36□□□□□ -1.23
VPS39-204ENST00000561818 SPATA7Q9P0W8 599 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 EIF2B4Q9UI10 523 aaKnown RBP7.36□□□□□ -1.23
VPS39-204ENST00000561818 CROTQ9UKG9 612 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 ACSL5Q9ULC5 683 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 PPT2Q9UMR5 302 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 WBP11Q9Y2W2 641 aaKnown RBP7.36□□□□□ -1.23
VPS39-204ENST00000561818 TSC22D4Q9Y3Q8 395 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 HEBP2Q9Y5Z4 205 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 PLXNA2O75051 1894 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 SLC5A10A0PJK1 596 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 MGAT4DA6NG13 374 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 CCDC154A6NI56 674 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 NCF1BA6NI72 391 aaPredicted RBP7.35□□□□□ -1.23
VPS39-204ENST00000561818 NCF1CA8MVU1 366 aaPredicted RBP7.35□□□□□ -1.23
VPS39-204ENST00000561818 ANHXE9PGG2 379 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 ARNTLO00327 626 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 UBFD1O14562 309 aaKnown RBP7.35□□□□□ -1.23
VPS39-204ENST00000561818 AIM2O14862 343 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 KMOO15229 486 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 MAP3K7O43318 606 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 PI15O43692 258 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 EEDO75530 441 aaKnown RBP7.35□□□□□ -1.23
VPS39-204ENST00000561818 RECQL5O94762 991 aaPredicted RBP7.35□□□□□ -1.23
VPS39-204ENST00000561818 SIX3O95343 332 aaPredicted RBP7.35□□□□□ -1.23
VPS39-204ENST00000561818 PSMG1O95456 288 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 CAPN1P07384 714 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 CTSLP07711 333 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 NCF1P14598 390 aaPredicted RBP7.35□□□□□ -1.23
VPS39-204ENST00000561818 ITGAXP20702 1163 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 HRH2P25021 359 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 NDUFS1P28331 727 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 GDI1P31150 447 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 GKP32189 559 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 OPRD1P41143 372 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 ETV3P41162 512 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 CASP2P42575 452 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 ASMTP46597 345 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 SLC6A12P48065 614 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 CDH13P55290 713 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 DMPKQ09013 629 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 TRAF3Q13114 568 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 SGCGQ13326 291 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 FLOT2Q14254 428 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 SPIN4Q56A73 249 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 TCEAL5Q5H9L2 206 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 VWA5B1Q5TIE3 1220 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 IL23RQ5VWK5 629 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 TANGO2Q6ICL3 276 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 SYCE2Q6PIF2 218 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 IL27RAQ6UWB1 636 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 CYHR1Q6ZMK1 362 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 SYVN1Q86TM6 617 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 LRRTM4Q86VH4 590 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 TRAPPC5Q8IUR0 188 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 DCUN1D3Q8IWE4 304 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 OXR1Q8N573 874 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 TBC1D19Q8N5T2 526 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 DPP10Q8N608 796 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 CLDN19Q8N6F1 224 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 SMRP1Q8NCR6 262 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 TTLQ8NG68 377 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 USP7Q93009 1102 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 UTP4Q969X6 686 aaKnown RBP7.35□□□□□ -1.23
VPS39-204ENST00000561818 FAM131CQ96AQ9 280 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 RAD51AP1Q96B01 352 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 LRGUKQ96M69 825 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 PRPF18Q99633 342 aaKnown RBP7.35□□□□□ -1.23
VPS39-204ENST00000561818 GABRG3Q99928 467 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 CENPKQ9BS16 269 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 TIMM29Q9BSF4 260 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 SHCBP1LQ9BZQ2 653 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 DENND2DQ9H6A0 471 aaPredicted RBP7.35□□□□□ -1.23
VPS39-204ENST00000561818 WDR26Q9H7D7 661 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 YY1AP1Q9H869 796 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 BATF3Q9NR55 127 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 C1orf109Q9NX04 203 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 CACNA2D2Q9NY47 1150 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 SLC7A8Q9UHI5 535 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 CORO2BQ9UQ03 480 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 FADS3Q9Y5Q0 445 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 STON1Q9Y6Q2 735 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.35□□□□□ -1.23
VPS39-204ENST00000561818 DOCK6Q96HP0 2047 aa7.35□□□□□ -1.23
VPS39-204ENST00000561818 DENND4AQ7Z401 1863 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 MUC22E2RYF6 1773 aaPredicted RBP7.34□□□□□ -1.23
VPS39-204ENST00000561818 A0A088AWK7 358 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 LOC100653049A0A140TA62 436 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 AQP12BA6NM10 295 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 GRXCR1A8MXD5 290 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 PRRT4C9JH25 899 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 H0YIV9 168 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 MAN2B1O00754 1011 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 LSM1O15116 133 aaKnown RBP7.34□□□□□ -1.23
VPS39-204ENST00000561818 SGTAO43765 313 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 PEX1O43933 1283 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 PEX11AO75192 247 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 BCAS2O75934 225 aaPredicted RBP7.34□□□□□ -1.23
VPS39-204ENST00000561818 KRT34O76011 436 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 CSPG5O95196 566 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms