RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 SDHDO14521 159 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 CRCPO75575 148 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 ESRRBO95718 433 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 MAP4P27816 1152 aaKnown RBP20.77■□□□□ 0.92
CLN3-209ENST00000561689 ARL1P40616 181 aaPredicted RBP20.77■□□□□ 0.92
CLN3-209ENST00000561689 BDKRB1P46663 353 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 STARD6P59095 220 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 CDKL1Q00532 357 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 CCSMST1Q4G0I0 132 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 KANK2Q63ZY3 851 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 GPRIN3Q6ZVF9 776 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 ACAD11Q709F0 780 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 HM13Q8TCT9 377 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 UBTD2Q8WUN7 234 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 APOOQ9BUR5 198 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 IPPKQ9H8X2 491 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 CYP8B1Q9UNU6 501 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 TIMM22Q9Y584 194 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 POM121BA6NF01 834 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 OR7A17O14581 309 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 STK16O75716 305 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 SEMA4FO95754 770 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 T-ENOLP0DO92 83 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 CDKL4Q5MAI5 379 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 TRIM69Q86WT6 500 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 KIRREL3Q8IZU9 778 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 SPDYE1Q8NFV5 336 aaPredicted RBP20.77■□□□□ 0.92
CLN3-209ENST00000561689 ATP6V1E2Q96A05 226 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 FOPNLQ96NB1 174 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 ZNF382Q96SR6 550 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 MEAF6Q9HAF1 191 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 SGK2Q9HBY8 427 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 ARL8BQ9NVJ2 186 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 ANGPTL3Q9Y5C1 460 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 PTGDR2Q9Y5Y4 395 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 CAPN7Q9Y6W3 813 aa20.77■□□□□ 0.92
CLN3-209ENST00000561689 GIPC1O14908 333 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 FSBPO95073 299 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 AP1S2P56377 157 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 ERVPABLB-1P60509 514 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 TREML1Q86YW5 311 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 TSTD1Q8NFU3 115 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 ASB12Q8WXK4 309 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 SHDQ96IW2 340 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 KLC4Q9NSK0 619 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 G3BP2Q9UN86 482 aaKnown RBP20.76■□□□□ 0.91
CLN3-209ENST00000561689 H0Y8X5 98 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 K7EPI3 171 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 KATNA1O75449 491 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 OR4F21O95013 312 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 CATP04040 527 aaKnown RBP20.76■□□□□ 0.91
CLN3-209ENST00000561689 CEACAM5P06731 702 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 TMEM198Q66K66 360 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 LETMD1Q6P1Q0 360 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 TWIST2Q8WVJ9 160 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 PYCR2Q96C36 320 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 C19orf60Q96EN9 201 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 MAELQ96JY0 434 aaKnown RBP20.76■□□□□ 0.91
CLN3-209ENST00000561689 CCDC106Q9BWC9 280 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 ATG10Q9H0Y0 220 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 MRPL40Q9NQ50 206 aaKnown RBP20.76■□□□□ 0.91
CLN3-209ENST00000561689 MOSPD1Q9UJG1 213 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 TRIM33Q9UPN9 1127 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 BTRCQ9Y297 605 aa20.76■□□□□ 0.91
CLN3-209ENST00000561689 ATP6AP2A0A1C7CYW4 349 aa20.75■□□□□ 0.91
CLN3-209ENST00000561689 CAPN14A8MX76 684 aa20.75■□□□□ 0.91
CLN3-209ENST00000561689 PRR5-ARHGAP8B1AHC4 643 aa20.75■□□□□ 0.91
CLN3-209ENST00000561689 CACNB4O00305 520 aaPredicted RBP20.75■□□□□ 0.91
CLN3-209ENST00000561689 KMOO15229 486 aa20.75■□□□□ 0.91
CLN3-209ENST00000561689 ATP6AP2O75787 350 aa20.75■□□□□ 0.91
CLN3-209ENST00000561689 UNC5CO95185 931 aa20.75■□□□□ 0.91
CLN3-209ENST00000561689 GGT5P36269 586 aa20.75■□□□□ 0.91
CLN3-209ENST00000561689 HNMTP50135 292 aa20.75■□□□□ 0.91
CLN3-209ENST00000561689 ACTN3Q08043 901 aaPredicted RBP20.75■□□□□ 0.91
CLN3-209ENST00000561689 CHST15Q7LFX5 561 aaPredicted RBP20.75■□□□□ 0.91
CLN3-209ENST00000561689 TCAIMQ8N3R3 496 aa20.75■□□□□ 0.91
CLN3-209ENST00000561689 CDYL2Q8N8U2 506 aa20.75■□□□□ 0.91
CLN3-209ENST00000561689 TOE1Q96GM8 510 aaKnown RBP20.75■□□□□ 0.91
CLN3-209ENST00000561689 C3orf30Q96M34 536 aa20.75■□□□□ 0.91
CLN3-209ENST00000561689 DPEP2Q9H4A9 486 aa20.75■□□□□ 0.91
CLN3-209ENST00000561689 TUBB1Q9H4B7 451 aa20.75■□□□□ 0.91
CLN3-209ENST00000561689 C6orf106Q9H6K1 298 aaPredicted RBP20.75■□□□□ 0.91
CLN3-209ENST00000561689 GPR89AB7ZAQ6 455 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 PIP5K1BO14986 540 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 GPR89BP0CG08 455 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 INHBCP55103 352 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 PKNOX1P55347 436 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 NCALDP61601 193 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 PLOD1Q02809 727 aaPredicted RBP20.74■□□□□ 0.91
CLN3-209ENST00000561689 PTCHD3Q3KNS1 767 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 METTL21CQ5VZV1 264 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 DDIASQ8IXT1 998 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 OXR1Q8N573 874 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 FRMD1Q8N878 549 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 OR4F6Q8NGB9 312 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 CCDC28BQ9BUN5 200 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 ACTR5Q9H9F9 607 aaPredicted RBP20.74■□□□□ 0.91
CLN3-209ENST00000561689 EBF2Q9HAK2 575 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 PSMD13Q9UNM6 376 aa20.74■□□□□ 0.91
CLN3-209ENST00000561689 SLC17A4Q9Y2C5 497 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms