RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 TSTD2Q5T7W7 516 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 FAM69BQ5VUD6 431 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 UNC5AQ6ZN44 842 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 TRIM73Q86UV7 250 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 ADGRF3Q8IZF5 1079 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 CARFQ8N187 725 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 GLIS1Q8NBF1 620 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 OR13J1Q8NGT2 312 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 OR6P1Q8NGX9 317 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 ZNF778Q96MU6 729 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 TRAPPC9Q96Q05 1148 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 TRIM55Q9BYV6 548 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 FANCEQ9HB96 536 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 RAB6BQ9NRW1 208 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 SERTAD3Q9UJW9 196 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 ANAPC2Q9UJX6 822 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 PLAGL1Q9UM63 463 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 ICKQ9UPZ9 632 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 ASF1AQ9Y294 204 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 TLN1Q9Y490 2541 aaKnown RBP9.91□□□□□ -0.82
LDLR-214ENST00000560628 SPTBP11277 2137 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 HEATR9A2RTY3 570 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 ERI2A8K979 691 aaKnown RBP9.9□□□□□ -0.82
LDLR-214ENST00000560628 IQCF5A8MTL0 148 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 BHMG1C9JSJ3 638 aaPredicted RBP9.9□□□□□ -0.82
LDLR-214ENST00000560628 LIN7AO14910 233 aaPredicted RBP9.9□□□□□ -0.82
LDLR-214ENST00000560628 ARHGAP6O43182 974 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 RFPL1O75677 317 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 SUN1O94901 812 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 RECKO95980 971 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 FTH1P02794 183 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 APRTP07741 180 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 GSTM1P09488 218 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 OR56A5P0C7T3 313 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 TPBGLP0DKB5 382 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 CYP2A7P20853 494 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 ADRA1DP25100 572 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 ACADLP28330 430 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 RPL22P35268 128 aaKnown RBP9.9□□□□□ -0.82
LDLR-214ENST00000560628 CCL11P51671 97 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 PMS2P54278 862 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 GSTM4Q03013 218 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 IL10RAQ13651 578 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 RPS6KA1Q15418 735 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 UGT8Q16880 541 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 PTCHD3Q3KNS1 767 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 SYTL3Q4VX76 610 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 ZNF789Q5FWF6 425 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 LYPLAL1Q5VWZ2 237 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 PACS1Q6VY07 963 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 CDHR3Q6ZTQ4 885 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 ASB18Q6ZVZ8 466 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 SYVN1Q86TM6 617 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 LDB1Q86U70 411 aaPredicted RBP9.9□□□□□ -0.82
LDLR-214ENST00000560628 HOOK3Q86VS8 718 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 DSELQ8IZU8 1212 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 CCDC89Q8N998 374 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 TEX19Q8NA77 164 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 OR4L1Q8NH43 312 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 CPT1BQ92523 772 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.9□□□□□ -0.826e-6■□□□□ 9.8
LDLR-214ENST00000560628 FRMD8P1Q9BZ68 369 aaPredicted RBP9.9□□□□□ -0.82
LDLR-214ENST00000560628 PITPNM3Q9BZ71 974 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 TSGA10Q9BZW7 698 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 SLC7A5P2Q9GIP4 190 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 ACTR5Q9H9F9 607 aaPredicted RBP9.9□□□□□ -0.82
LDLR-214ENST00000560628 FAM60AQ9NP50 221 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 CASS4Q9NQ75 786 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 LATS2Q9NRM7 1088 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 SPHK1Q9NYA1 384 aa9.9□□□□□ -0.82
LDLR-214ENST00000560628 BOD1L1Q8NFC6 3051 aa9.9□□□□□ -0.83
LDLR-214ENST00000560628 SLC5A10A0PJK1 596 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 ARGFXA6NJG6 315 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 GOLGA6L6A8MZA4 724 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 QSOX1O00391 747 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 ZNF749O43361 778 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 KRT86O43790 486 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 PDGFAP04085 211 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 CHRM5P08912 532 aaPredicted RBP9.89□□□□□ -0.83
LDLR-214ENST00000560628 UGT2B7P16662 529 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 CCR7P32248 378 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 SHMT2P34897 504 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 ITGA1P56199 1179 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 GSDMDP57764 484 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 SESN2P58004 480 aaPredicted RBP9.89□□□□□ -0.83
LDLR-214ENST00000560628 PRAMEP78395 509 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 CRADDP78560 199 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 KLRB1Q12918 225 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 SEMA5AQ13591 1074 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 LAMB3Q13751 1172 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 SEMA3AQ14563 771 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 ZIC1Q15915 447 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 FASTKD1Q53R41 847 aaKnown RBP9.89□□□□□ -0.83
LDLR-214ENST00000560628 MEI1Q5TIA1 1274 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 IZUMO3Q5VZ72 239 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 CPZQ66K79 652 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 TCTN3Q6NUS6 607 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 AFTPHQ6ULP2 937 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 SPESP1Q6UW49 350 aa9.89□□□□□ -0.83
LDLR-214ENST00000560628 ZNF517Q6ZMY9 492 aaPredicted RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms