RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 SMOXQ9NWM0 555 aa17.23■□□□□ 0.35
TSPAN3-208ENST00000560514 IL17CQ9P0M4 197 aa17.23■□□□□ 0.35
TSPAN3-208ENST00000560514 MED13LQ71F56 2210 aa17.23■□□□□ 0.35
TSPAN3-208ENST00000560514 BTN3A3O00478 584 aa17.22■□□□□ 0.35
TSPAN3-208ENST00000560514 RALBP11234 206 aa17.22■□□□□ 0.35
TSPAN3-208ENST00000560514 NFKBIBQ15653 356 aa17.22■□□□□ 0.35
TSPAN3-208ENST00000560514 VWA2Q5GFL6 755 aa17.22■□□□□ 0.35
TSPAN3-208ENST00000560514 ZNF449Q6P9G9 518 aa17.22■□□□□ 0.35
TSPAN3-208ENST00000560514 SLC25A41Q8N5S1 370 aa17.22■□□□□ 0.35
TSPAN3-208ENST00000560514 C19orf47Q8N9M1 422 aaKnown RBP17.22■□□□□ 0.35
TSPAN3-208ENST00000560514 NACC2Q96BF6 587 aa17.22■□□□□ 0.35
TSPAN3-208ENST00000560514 ACTR10Q9NZ32 417 aa17.22■□□□□ 0.35
TSPAN3-208ENST00000560514 DHCR7Q9UBM7 475 aaKnown RBP17.22■□□□□ 0.35
TSPAN3-208ENST00000560514 FAM153AQ9UHL3 310 aa17.22■□□□□ 0.35
TSPAN3-208ENST00000560514 CDC23Q9UJX2 597 aa17.22■□□□□ 0.35
TSPAN3-208ENST00000560514 FBXL4Q9UKA2 621 aa17.22■□□□□ 0.35
TSPAN3-208ENST00000560514 PKDREJQ9NTG1 2253 aa17.22■□□□□ 0.35
TSPAN3-208ENST00000560514 CELSR1Q9NYQ6 3014 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 APOL1O14791 398 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 STX7O15400 261 aaKnown RBP17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 ZSCAN9O15535 394 aaPredicted RBP17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 BUD23O43709 281 aaKnown RBP17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 PRAMEF1O95521 474 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 KDELR1P24390 212 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 OTUD4Q01804 1114 aaKnown RBP17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 NOMO1Q15155 1222 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 NKAIN1Q4KMZ8 207 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 BCL7AQ4VC05 210 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 TEX44Q53QW1 395 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 SIRPB2Q5JXA9 342 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 TLDC1Q6P9B6 456 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 IGFL2Q6UWQ7 119 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 DAAM2Q86T65 1068 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 AMIGO1Q86WK6 493 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 PLD5Q8N7P1 536 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 HM13Q8TCT9 377 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 RELTQ969Z4 430 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 VPS50Q96JG6 964 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 MAGEB10Q96LZ2 347 aaPredicted RBP17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 SLX1AQ9BQ83 275 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 NDC1Q9BTX1 674 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 SPRTNQ9H040 489 aaPredicted RBP17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 SLC6A20Q9NP91 592 aa17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 SETD2Q9BYW2 2564 aaPredicted RBP17.21■□□□□ 0.35
TSPAN3-208ENST00000560514 PDZD2O15018 2839 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 LRRD1A4D1F6 860 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 PROSCO94903 275 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 UMODP07911 640 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 ZFXP17010 805 aaPredicted RBP17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 MMP11P24347 488 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 HTR1EP28566 365 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 PBX1P40424 430 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 WNT3AP56704 352 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 TAS2R40P59535 323 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 ZBED6P86452 979 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 PRKD1Q15139 912 aaPredicted RBP17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 DEFB110Q30KQ9 67 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 ODF2Q5BJF6 829 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 MRPL14Q6P1L8 145 aaKnown RBP17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 SPESP1Q6UW49 350 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 BNC2Q6ZN30 1099 aaPredicted RBP17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 ZNF655Q8N720 491 aaPredicted RBP17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 OR52E1Q8NGJ3 308 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 ITLN2Q8WWU7 325 aaPredicted RBP17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 RAPGEF5Q92565 580 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 LINC00615Q96LM1 132 aaPredicted RBP17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 TFB2MQ9H5Q4 396 aaKnown RBP17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 MVB12BQ9H7P6 319 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 CTTNBP2NLQ9P2B4 639 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 CAPN11Q9UMQ6 739 aa17.2■□□□□ 0.34
TSPAN3-208ENST00000560514 LOC285095A0A1B0GVY8 99 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 ALOX12BO75342 701 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 EPOP01588 193 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 SERPING1P05155 500 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 UBASH3AP57075 661 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 FOXL2P58012 376 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 FANCCQ00597 558 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 MTFR2Q6P444 385 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 MRGPRGQ86SM5 289 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 CPNE8Q86YQ8 564 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 ZNF808Q8N4W9 903 aaPredicted RBP17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 LILRA3Q8N6C8 439 aaPredicted RBP17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 NAT14Q8WUY8 206 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 TEKT5Q96M29 485 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 LHPPQ9H008 270 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 ASB8Q9H765 288 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 FAM60AQ9NP50 221 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 LCMT1Q9UIC8 334 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 ZFHX3Q15911 3703 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 CCDC168Q8NDH2 2452 aa17.19■□□□□ 0.34
TSPAN3-208ENST00000560514 TRGV8A0A0C4DH27 118 aa17.18■□□□□ 0.34
TSPAN3-208ENST00000560514 CFAP99D6REC4 459 aa17.18■□□□□ 0.34
TSPAN3-208ENST00000560514 CNOT3O75175 753 aaKnown RBP17.18■□□□□ 0.34
TSPAN3-208ENST00000560514 PIM1P11309 404 aaPredicted RBP17.18■□□□□ 0.34
TSPAN3-208ENST00000560514 ALAS2P22557 587 aa17.18■□□□□ 0.34
TSPAN3-208ENST00000560514 CHRNA4P43681 627 aa17.18■□□□□ 0.34
TSPAN3-208ENST00000560514 KCNK10P57789 538 aa17.18■□□□□ 0.34
TSPAN3-208ENST00000560514 RPUSD3Q6P087 351 aaKnown RBP17.18■□□□□ 0.34
TSPAN3-208ENST00000560514 ISLR2Q6UXK2 745 aa17.18■□□□□ 0.34
TSPAN3-208ENST00000560514 GFRALQ6UXV0 394 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms