RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	PPP1CA	P62136	330 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	SARNP	P82979	210 aa	Known RBP	13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	CDK16	Q00536	496 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	ERV3-1	Q14264	604 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	KCNAB1	Q14722	419 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	TSTD2	Q5T7W7	516 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	TTC23L	Q6PF05	361 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	LRRC6	Q86X45	466 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	RAB42	Q8N4Z0	105 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	CLDN19	Q8N6F1	224 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	OR52E1	Q8NGJ3	308 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	OR6P1	Q8NGX9	317 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	OR4L1	Q8NH43	312 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	DENND1A	Q8TEH3	1009 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	ASZ1	Q8WWH4	475 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	MR1	Q95460	341 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	SLC22A18	Q96BI1	424 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	ZNF501	Q96CX3	271 aa	Predicted RBP	13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	CLIP3	Q96DZ5	547 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	TCTN2	Q96GX1	697 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	PANX3	Q96QZ0	392 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	HGH1	Q9BTY7	390 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	IL22	Q9GZX6	179 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	CHRNA10	Q9GZZ6	450 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	ACTL8	Q9H568	366 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	ETNK1	Q9HBU6	452 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	BFAR	Q9NZS9	450 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	AP1M2	Q9Y6Q5	423 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	MYO18B	Q8IUG5	2567 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	CCDC162P	A2VCL2	907 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	CDC14C	A4D256	554 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	SLC9B1P1	A6NJY1	282 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	TERT	O14746	1132 aa	Known RBP	13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	RAB40AL	P0C0E4	278 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	AGXT	P21549	392 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	FOXN2	P32314	431 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	CASR	P41180	1078 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	ITGA1	P56199	1179 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	ACVR1	Q04771	509 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	GPR19	Q15760	415 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	UGT8	Q16880	541 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	PCID2	Q5JVF3	399 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	MEI1	Q5TIA1	1274 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	IZUMO3	Q5VZ72	239 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	SPESP1	Q6UW49	350 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	APLF	Q8IW19	511 aa	Predicted RBP	13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	PIANP	Q8IYJ0	282 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	TAB3	Q8N5C8	712 aa	Predicted RBP	13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	OR5K2	Q8NHB8	316 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	HDAC10	Q969S8	669 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	RAB11FIP5	Q9BXF6	653 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	ACTR5	Q9H9F9	607 aa	Predicted RBP	13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	CASS4	Q9NQ75	786 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	INTS7	Q9NVH2	962 aa	Known RBP	13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	ACTR10	Q9NZ32	417 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	DRG1	Q9Y295	367 aa	Known RBP	13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	TCAF1	Q9Y4C2	921 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	KCNMB2	Q9Y691	235 aa		13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	FLNB	O75369	2602 aa	Known RBP	13.66	□□□□□ -0.22
TPM1-223	ENST00000560445	TCRBV7S2A1N4T	A0A589	114 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	TMEM150C	B9EJG8	249 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445		E7EQ34	232 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	MEN1	O00255	615 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	BTN3A1	O00481	513 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	KLHL41	O60662	606 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	FKBP9	O95302	570 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	GOT2	P00505	430 aa	Known RBP	13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	IGHE	P01854	428 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	NTRK1	P04629	796 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	NPY2R	P49146	381 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	CDKN1C	P49918	316 aa	Predicted RBP	13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	KLRB1	Q12918	225 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	KIR2DS3	Q14952	304 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	ZNF658B	Q4V348	819 aa	Predicted RBP	13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	CCDC38	Q502W7	563 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	RNF187	Q5TA31	235 aa	Predicted RBP	13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	TCTN3	Q6NUS6	607 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	UNC5D	Q6UXZ4	953 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	HPS6	Q86YV9	775 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	LILRA3	Q8N6C8	439 aa	Predicted RBP	13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	C1orf54	Q8WWF1	131 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	ABHD17A	Q96GS6	310 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	IP6K3	Q96PC2	410 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	DHRS4	Q9BTZ2	278 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	TLR10	Q9BXR5	811 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	NLN	Q9BYT8	704 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	CATSPERZ	Q9NTU4	200 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	PIH1D1	Q9NWS0	290 aa	Known RBP	13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	GNPTG	Q9UJJ9	305 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	SNX7	Q9UNH6	387 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	SRPK3	Q9UPE1	567 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	FARSA	Q9Y285	508 aa	Known RBP	13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	VPS9D1	Q9Y2B5	631 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445	BOD1L1	Q8NFC6	3051 aa		13.65	□□□□□ -0.22
TPM1-223	ENST00000560445		A0A0U1RQJ8	604 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445		H3BMM5	538 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	PRMT5	O14744	637 aa	Predicted RBP	13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	TIAF1	O95411	115 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	PAM	P19021	973 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	PDHA2	P29803	388 aa		13.64	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms