RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 IFT88Q13099 833 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 FBXO48Q5FWF7 155 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 CDKL4Q5MAI5 379 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 GKAP1Q5VSY0 366 aaPredicted RBP10.96□□□□□ -0.65
USP3-218ENST00000560202 ANKS6Q68DC2 871 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 FRMD7Q6ZUT3 714 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 RPS27LQ71UM5 84 aaKnown RBP10.96□□□□□ -0.65
USP3-218ENST00000560202 CACNA2D3Q8IZS8 1091 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 LSMEM2Q8N112 164 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 FAM174AQ8TBP5 190 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 MCOLN3Q8TDD5 553 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 TSACCQ96A04 125 aaPredicted RBP10.96□□□□□ -0.65
USP3-218ENST00000560202 ESAMQ96AP7 390 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 PDXPQ96GD0 296 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 SLC6A18Q96N87 628 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 C1QTNF3Q9BXJ4 246 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 GSTO2Q9H4Y5 243 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 PRMT8Q9NR22 394 aaPredicted RBP10.96□□□□□ -0.65
USP3-218ENST00000560202 ARL15Q9NXU5 204 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 DOCK9Q9BZ29 2069 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 PIKFYVEQ9Y2I7 2098 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 ARHGEF33A8MVX0 844 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 TAPBPO15533 448 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 SNUPNO95149 360 aaKnown RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 CATP04040 527 aaKnown RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 RPS17P08708 135 aaKnown RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 ANXA5P08758 320 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 THEGLP0DJG4 465 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 TROVE2P10155 538 aaKnown RBP eCLIP10.95□□□□□ -0.66
USP3-218ENST00000560202 BCKDHBP21953 392 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 MAP4P27816 1152 aaKnown RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 ACADLP28330 430 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 AP1S2P56377 157 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 SRP54P61011 504 aaKnown RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 PTK2BQ14289 1009 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 C18orf21Q32NC0 220 aaPredicted RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 SULT1C3Q6IMI6 304 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 RD3Q7Z3Z2 195 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 SPATA21Q7Z572 469 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 PDZD3Q86UT5 571 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 SLC22A18ASQ8N1D0 253 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 SPDYE1Q8NFV5 336 aaPredicted RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 PIWIL2Q8TC59 973 aaKnown RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 RHBDF1Q96CC6 855 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 THOC1Q96FV9 657 aaKnown RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 OR2M4Q96R27 311 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 TRMOQ9BU70 441 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 TRIM55Q9BYV6 548 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 ZDHHC5Q9C0B5 715 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 ILKAPQ9H0C8 392 aaPredicted RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 NPHS2Q9NP85 383 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 AASDHPPTQ9NRN7 309 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 KLQ9UEF7 1012 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 EIF2B4Q9UI10 523 aaKnown RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 PTBP2Q9UKA9 531 aaKnown RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 ACSL5Q9ULC5 683 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 KCNK6Q9Y257 313 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 RAP2CQ9Y3L5 183 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 PLEKHM1Q9Y4G2 1056 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 TNPO3Q9Y5L0 923 aaKnown RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 SLCO1B1Q9Y6L6 691 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 PRR19A6NJB7 356 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 MEI4A8MW99 385 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 SCAMP1O15126 338 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 LAMTOR5O43504 91 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 C1orf105O95561 183 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 KITP10721 976 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 TDGF1P13385 188 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 FNTBP49356 437 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 CDH13P55290 713 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 NAA20P61599 178 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 GALNT1Q10472 559 aaPredicted RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 PRKAA1Q13131 559 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 PCBP2Q15366 365 aaKnown RBP eCLIP10.95□□□□□ -0.66
USP3-218ENST00000560202 ALG11Q2TAA5 492 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 MBOAT1Q6ZNC8 495 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 TCAIMQ8N3R3 496 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 ZNF781Q8N8C0 355 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 ZNF483Q8TF39 744 aaPredicted RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 KLHDC7BQ96G42 594 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 SEC16BQ96JE7 1060 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 HSPA12BQ96MM6 686 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 NSUN5Q96P11 429 aaKnown RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 OSGEPL1Q9H4B0 414 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 EML4Q9HC35 981 aaKnown RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 GPR27Q9NS67 375 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 PNPOQ9NVS9 261 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 WWOXQ9NZC7 414 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 KLHL14Q9P2G3 628 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 MARCOQ9UEW3 520 aaPredicted RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 HAO1Q9UJM8 370 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 PCTPQ9UKL6 214 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 PNMA8BQ9ULN7 279 aaPredicted RBP10.95□□□□□ -0.66
USP3-218ENST00000560202 PSMD13Q9UNM6 376 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 ASB1Q9Y576 335 aa10.95□□□□□ -0.66
USP3-218ENST00000560202 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 SPTY2D1-AS1A0A0U1RR47 76 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 IFRD1O00458 451 aaPredicted RBP10.94□□□□□ -0.66
USP3-218ENST00000560202 E2F3O00716 465 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms