RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 MPP3Q13368 585 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 TFDP2Q14188 446 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 ZRSR2Q15696 482 aaKnown RBP12.24□□□□□ -0.45
SHMT2-223ENST00000556689 SLC18A3Q16572 532 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 CYP2A13Q16696 494 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 RHBDD2Q6NTF9 364 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 ZNF449Q6P9G9 518 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 LUZP1Q86V48 1076 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 ADGRF3Q8IZF5 1079 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 OR4K2Q8NGD2 314 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 OR52E1Q8NGJ3 308 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 PROKR1Q8TCW9 393 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.24□□□□□ -0.45
SHMT2-223ENST00000556689 OXNAD1Q96HP4 312 aaPredicted RBP12.24□□□□□ -0.45
SHMT2-223ENST00000556689 GBP5Q96PP8 586 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 VAT1Q99536 393 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 NRTNQ99748 197 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 FSD1LQ9BXM9 530 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 SPRTNQ9H040 489 aaPredicted RBP12.24□□□□□ -0.45
SHMT2-223ENST00000556689 MVB12BQ9H7P6 319 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 FAM60AQ9NP50 221 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 DDX56Q9NY93 547 aaKnown RBP12.24□□□□□ -0.45
SHMT2-223ENST00000556689 OSGIN2Q9Y236 505 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 C5orf60A6NFR6 353 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 H3BMH7 237 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 AGPSO00116 658 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 MASP2O00187 686 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 CBFA2T2O43439 604 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 AGTP01019 485 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 PRF1P14222 555 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 PRLHRP49683 370 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 UBASH3AP57075 661 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 FANCCQ00597 558 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 PRKG2Q13237 762 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 IQCB1Q15051 598 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 TAF1AQ15573 450 aaPredicted RBP12.23□□□□□ -0.45
SHMT2-223ENST00000556689 MFSD7Q6UXD7 560 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 PPP1R32Q7Z5V6 425 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 ZNF567Q8N184 647 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 COG1Q8WTW3 980 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 HEXDCQ8WVB3 486 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 TFGQ92734 400 aaPredicted RBP12.23□□□□□ -0.45
SHMT2-223ENST00000556689 NACC2Q96BF6 587 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 WDR77Q9BQA1 342 aaPredicted RBP12.23□□□□□ -0.45
SHMT2-223ENST00000556689 OR52A5Q9H2C5 316 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 DEF6Q9H4E7 631 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 XKR8Q9H6D3 395 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 RUBCNLQ9H714 662 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 COG4Q9H9E3 785 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 TXLNGQ9NUQ3 528 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 CRLS1Q9UJA2 301 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 TRHDEQ9UKU6 1024 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 PCSK5Q92824 1860 aa12.23□□□□□ -0.45
SHMT2-223ENST00000556689 SPTBP11277 2137 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 PIKFYVEQ9Y2I7 2098 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 AGAP14A8MT82 685 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 GOLGA6L6A8MZA4 724 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 CFAP99D6REC4 459 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 CST8O60676 142 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 TNNT1P13805 278 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 EDN3P14138 238 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 PECAM1P16284 738 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-223ENST00000556689 ITGA3P26006 1051 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 CDKN2BP42772 138 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 XIAPP98170 497 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 HIF1AQ16665 826 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 NKAIN1Q4KMZ8 207 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 KAZNQ674X7 775 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 MRPL14Q6P1L8 145 aaKnown RBP12.22□□□□□ -0.45
SHMT2-223ENST00000556689 TLDC1Q6P9B6 456 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 SPESP1Q6UW49 350 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 ZC3H18Q86VM9 953 aaKnown RBP12.22□□□□□ -0.45
SHMT2-223ENST00000556689 ZNF655Q8N720 491 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-223ENST00000556689 C19orf47Q8N9M1 422 aaKnown RBP12.22□□□□□ -0.45
SHMT2-223ENST00000556689 DNAJB14Q8TBM8 379 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 GRHL3Q8TE85 626 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 PPP4R1Q8TF05 950 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 FAR1Q8WVX9 515 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 P3H4Q92791 437 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 ULK4Q96C45 1275 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 COPS8Q99627 209 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 UNKQ9C0B0 810 aaKnown RBP12.22□□□□□ -0.45
SHMT2-223ENST00000556689 CHRNA10Q9GZZ6 450 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 FAM96AQ9H5X1 160 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 VPS37BQ9H9H4 285 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 GRPEL1Q9HAV7 217 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 IGSF5Q9NSI5 407 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 DHCR7Q9UBM7 475 aaKnown RBP12.22□□□□□ -0.45
SHMT2-223ENST00000556689 RSPH14Q9UHP6 348 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 FKBPLQ9UIM3 349 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 NOVA2Q9UNW9 492 aaKnown RBP12.22□□□□□ -0.45
SHMT2-223ENST00000556689 CDYLQ9Y232 598 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 CSAG2Q9Y5P2 127 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 SEC16AO15027 2179 aa12.22□□□□□ -0.45
SHMT2-223ENST00000556689 CSMD1Q96PZ7 3565 aa12.21□□□□□ -0.45
SHMT2-223ENST00000556689 TEP1Q99973 2627 aaKnown RBP12.21□□□□□ -0.45
SHMT2-223ENST00000556689 A0A1B0GUH1 482 aa12.21□□□□□ -0.45
SHMT2-223ENST00000556689 ZSCAN9O15535 394 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-223ENST00000556689 HCRTR1O43613 425 aa12.21□□□□□ -0.45
SHMT2-223ENST00000556689 ZG16O60844 167 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms