RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 SRPK1Q96SB4 655 aaKnown RBP10.32□□□□□ -0.76
SHMT2-215ENST00000554656 VAT1Q99536 393 aa10.32□□□□□ -0.76
SHMT2-215ENST00000554656 MAP3K3Q99759 626 aa10.32□□□□□ -0.76
SHMT2-215ENST00000554656 TRIM55Q9BYV6 548 aa10.32□□□□□ -0.76
SHMT2-215ENST00000554656 SMOXQ9NWM0 555 aa10.32□□□□□ -0.76
SHMT2-215ENST00000554656 KLHL8Q9P2G9 620 aaPredicted RBP10.32□□□□□ -0.76
SHMT2-215ENST00000554656 ANKMY1Q9P2S6 941 aa10.32□□□□□ -0.76
SHMT2-215ENST00000554656 POLHQ9Y253 713 aa10.32□□□□□ -0.76
SHMT2-215ENST00000554656 ARL5AQ9Y689 179 aa10.32□□□□□ -0.76
SHMT2-215ENST00000554656 SPTBN1Q01082 2364 aaKnown RBP10.31□□□□□ -0.76
SHMT2-215ENST00000554656 SEC16AO15027 2179 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 CDC14CA4D256 554 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 OR5K3A6NET4 321 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 CREG1O75629 220 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 DNAJB5O75953 348 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 AGTP01019 485 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 EPOP01588 193 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 MTHFD1P11586 935 aaKnown RBP10.31□□□□□ -0.76
SHMT2-215ENST00000554656 VCLP18206 1134 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 HLA-DPA1P20036 260 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 HALP42357 657 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 PMS2P54278 862 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 GDF10P55107 478 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 EIF3BP55884 814 aaKnown RBP10.31□□□□□ -0.76
SHMT2-215ENST00000554656 CDK16Q00536 496 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 DHX9Q08211 1270 aaKnown RBP10.31□□□□□ -0.76
SHMT2-215ENST00000554656 TRIP13Q15645 432 aaPredicted RBP10.31□□□□□ -0.76
SHMT2-215ENST00000554656 LDLRAP1Q5SW96 308 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 METRNLQ641Q3 311 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 CPZQ66K79 652 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 FAM199XQ6PEV8 388 aaPredicted RBP10.31□□□□□ -0.76
SHMT2-215ENST00000554656 DET1Q7L5Y6 550 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 CROCCP2Q86T23 111 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 IQCKQ8N0W5 287 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 NAT8LQ8N9F0 302 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 GLIS1Q8NBF1 620 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 SIDT2Q8NBJ9 832 aaKnown RBP10.31□□□□□ -0.76
SHMT2-215ENST00000554656 BRSK1Q8TDC3 778 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 MIB2Q96AX9 1013 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 SPATA13Q96N96 652 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 INSM2Q96T92 566 aaPredicted RBP10.31□□□□□ -0.76
SHMT2-215ENST00000554656 ZCCHC2Q9C0B9 1178 aaKnown RBP10.31□□□□□ -0.76
SHMT2-215ENST00000554656 WWP1Q9H0M0 922 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 ACTL8Q9H568 366 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 MED4Q9NPJ6 270 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 LHX9Q9NQ69 397 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 HACD3Q9P035 362 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 TLK1Q9UKI8 766 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 TRHDEQ9UKU6 1024 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 CCDC88CQ9P219 2028 aa10.31□□□□□ -0.76
SHMT2-215ENST00000554656 ICE1Q9Y2F5 2266 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 TLCD2A6NGC4 264 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 KCNJ13O60928 360 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 RFPL1O75677 317 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 PRAMEF1O95521 474 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 NTRK1P04629 796 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 NUDT17P0C025 328 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 ETS1P14921 441 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 TPSB2P20231 275 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 ADRA1AP35348 466 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 ARCN1P48444 511 aaKnown RBP10.3□□□□□ -0.76
SHMT2-215ENST00000554656 VPS41P49754 854 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 KPNA2P52292 529 aaKnown RBP10.3□□□□□ -0.76
SHMT2-215ENST00000554656 KLRB1Q12918 225 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 MPP3Q13368 585 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 MSLNQ13421 630 aaPredicted RBP10.3□□□□□ -0.76
SHMT2-215ENST00000554656 SEMA5AQ13591 1074 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 IL10RAQ13651 578 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 SEPT6Q14141 434 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 UBAP2LQ14157 1087 aaKnown RBP10.3□□□□□ -0.76
SHMT2-215ENST00000554656 KCNJ11Q14654 390 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 PLCL1Q15111 1095 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 TPSAB1Q15661 275 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 GPR19Q15760 415 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 FNBP1LQ5T0N5 605 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 ZDHHC20Q5W0Z9 365 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 TCTN3Q6NUS6 607 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 PID1Q7Z2X4 250 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 D2HGDHQ8N465 521 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 SLC38A9Q8NBW4 561 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 MCUQ8NE86 351 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 CPT1BQ92523 772 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 ZNF514Q96K75 400 aaPredicted RBP10.3□□□□□ -0.76
SHMT2-215ENST00000554656 RMDN2Q96LZ7 410 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 TTC25Q96NG3 672 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 PPP1R2P1Q96PQ5 205 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 NRTNQ99748 197 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 FICDQ9BVA6 458 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 TWSG1Q9GZX9 223 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 GBA3Q9H227 469 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 FGF21Q9NSA1 209 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 IMP3Q9NV31 184 aaKnown RBP10.3□□□□□ -0.76
SHMT2-215ENST00000554656 FAM8A1Q9UBU6 413 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 RSPH14Q9UHP6 348 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 FKBPLQ9UIM3 349 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 KCND3Q9UK17 655 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 RARRES3Q9UL19 164 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 PADI1Q9ULC6 663 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 PKP3Q9Y446 797 aa10.3□□□□□ -0.76
SHMT2-215ENST00000554656 PCDHB3Q9Y5E6 796 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms