RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 PIP5K1BO14986 540 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 SNPHO15079 494 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 NADKO95544 446 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-207ENST00000553837 EFEMP2O95967 443 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 IRF1P10914 325 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 BMP4P12644 408 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 SLC6A2P23975 617 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 CORO1AP31146 461 aaKnown RBP12.03□□□□□ -0.48
SHMT2-207ENST00000553837 ALDH3A2P51648 485 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 FOXD4Q12950 439 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-207ENST00000553837 HIST2H2ACQ16777 129 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-207ENST00000553837 KIF19Q2TAC6 998 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 TTC23Q5W5X9 447 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 PSAPL1Q6NUJ1 521 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 TBPL2Q6SJ96 375 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 GLT6D1Q7Z4J2 308 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 ADCK1Q86TW2 530 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 FAM126BQ8IXS8 530 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 CLYBLQ8N0X4 340 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 LPCAT1Q8NF37 534 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 RAET1EQ8TD07 263 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 AURKBQ96GD4 344 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-207ENST00000553837 DGCR6LQ9BY27 220 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 TFB2MQ9H5Q4 396 aaKnown RBP12.03□□□□□ -0.48
SHMT2-207ENST00000553837 POPDC3Q9HBV1 291 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 BPIFA1Q9NP55 256 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 PDE10AQ9Y233 779 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 ANGPTL3Q9Y5C1 460 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 GBF1Q92538 1859 aa12.03□□□□□ -0.48
SHMT2-207ENST00000553837 NDUFS2O75306 463 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 ECI2O75521 394 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 RHOBTB1O94844 696 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 THRBP10828 461 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 PRDX3P30048 256 aaKnown RBP12.02□□□□□ -0.48
SHMT2-207ENST00000553837 GRK3P35626 688 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 ETV3P41162 512 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 SLC11A2P49281 568 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 AGTR2P50052 363 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 PPP5CP53041 499 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 ARSFP54793 590 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 ARF5P84085 180 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 TSNQ15631 228 aaKnown RBP12.02□□□□□ -0.48
SHMT2-207ENST00000553837 LRIT3Q3SXY7 679 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 VPS26BQ4G0F5 336 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 C6orf141Q5SZD1 244 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 OTUD3Q5T2D3 398 aaPredicted RBP12.02□□□□□ -0.48
SHMT2-207ENST00000553837 KANK2Q63ZY3 851 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 SLC8B1Q6J4K2 584 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 CXorf57Q6NSI4 855 aaKnown RBP12.02□□□□□ -0.48
SHMT2-207ENST00000553837 PTRH1Q86Y79 214 aaKnown RBP12.02□□□□□ -0.48
SHMT2-207ENST00000553837 DCP2Q8IU60 420 aaKnown RBP12.02□□□□□ -0.48
SHMT2-207ENST00000553837 RHEBL1Q8TAI7 183 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 HCAR2Q8TDS4 363 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 SLC22A17Q8WUG5 538 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 TWIST2Q8WVJ9 160 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 KIAA1191Q96A73 305 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 VPS33AQ96AX1 596 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 LRRC58Q96CX6 371 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 GPR21Q99679 349 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 MARCH7Q9H992 704 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 NECTIN3Q9NQS3 549 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 FKBPLQ9UIM3 349 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 AGO1Q9UL18 857 aaKnown RBP12.02□□□□□ -0.48
SHMT2-207ENST00000553837 BTRCQ9Y297 605 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 FNDC3AQ9Y2H6 1198 aaKnown RBP12.02□□□□□ -0.48
SHMT2-207ENST00000553837 TESMINQ9Y4I5 508 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 ASB1Q9Y576 335 aa12.02□□□□□ -0.48
SHMT2-207ENST00000553837 FAM172BPA6NC97 362 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 NPEPPSL1A6NEC2 478 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 AZIN1O14977 448 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 DYRK3O43781 588 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 XYLBO75191 536 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 RFPL2O75678 378 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 FKBP9O95302 570 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 PRAMEF12O95522 483 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 TSPAN12O95859 305 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 RHOCP08134 193 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 FGF4P08620 206 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 LINC00032P0C843 101 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 MTHFD1P11586 935 aaKnown RBP12.02□□□□□ -0.49
SHMT2-207ENST00000553837 PSMA3P25788 255 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 PHC1P78364 1004 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 SMARCB1Q12824 385 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 CAPRIN1Q14444 709 aaKnown RBP12.02□□□□□ -0.49
SHMT2-207ENST00000553837 TAF1AQ15573 450 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-207ENST00000553837 HECTD3Q5T447 861 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 RNF219Q5W0B1 726 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-207ENST00000553837 TAS2R42Q7RTR8 314 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 MIER2Q8N344 545 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 C2orf15Q8WU43 125 aaKnown RBP12.02□□□□□ -0.49
SHMT2-207ENST00000553837 PHF10Q8WUB8 498 aaKnown RBP12.02□□□□□ -0.49
SHMT2-207ENST00000553837 CLSTN3Q9BQT9 956 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 C2orf49Q9BVC5 232 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-207ENST00000553837 CHID1Q9BWS9 393 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 TRIM54Q9BYV2 358 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 DERL2Q9GZP9 239 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 SEMA4BQ9NPR2 832 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-207ENST00000553837 ZNF225Q9UK10 706 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 PCDHA9Q9Y5H5 950 aa12.02□□□□□ -0.49
SHMT2-207ENST00000553837 RAI2Q9Y5P3 530 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms