RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 NUP205Q92621 2012 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 A0A1W2PQM1 296 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 TRBC2A0A5B9 178 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 DPPA5A6NC42 116 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 H0YIZ8 118 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 PRYO14603 147 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 ADAM12O43184 909 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 SLC25A17O43808 307 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 AVILO75366 819 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 ECI2O75521 394 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 MTA2O94776 668 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 RHOBTB1O94844 696 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 TJP3O95049 919 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 PAPSS2O95340 614 aaPredicted RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 MT-CO3P00414 261 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 TFP02787 698 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 CD63P08962 238 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 ZNF182P17025 639 aaPredicted RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 CEBPBP17676 345 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 ERCC2P18074 760 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 GABRB1P18505 474 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 BCKDHBP21953 392 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 FCARP24071 287 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 TBXAS1P24557 533 aaPredicted RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 ZFP36P26651 326 aaKnown RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 YWHAQP27348 245 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 CCND2P30279 289 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 ADSSP30520 456 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 HOXA6P31267 233 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 CDAP32320 146 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 RDXP35241 583 aaKnown RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 ADRA1BP35368 520 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 TDO2P48775 406 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 ZNF41P51814 821 aaPredicted RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 CLDN6P56747 220 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 RIPPLY3P57055 190 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 MRPS35P82673 323 aaKnown RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 MRPS21P82921 87 aaKnown RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 PPP2R5CQ13362 524 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 OLIG2Q13516 323 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 NEDD9Q14511 834 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 PON2Q15165 354 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 RNPS1Q15287 305 aaKnown RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 QRICH1Q2TAL8 776 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 FBXO43Q4G163 708 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 AARS2Q5JTZ9 985 aaKnown RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 FAM78AQ5JUQ0 283 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 KRBOX4Q5JUW0 171 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 ABHD17BQ5VST6 288 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 KIAA0930Q6ICG6 404 aaPredicted RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 C11orf88Q6PI97 169 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 PRSS55Q6UWB4 352 aaPredicted RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 VITQ6UXI7 678 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 LRIG3Q6UXM1 1119 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 MFSD6Q6ZSS7 791 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 TBC1D26Q86UD7 250 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 CCDC25Q86WR0 208 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 UNC45BQ8IWX7 931 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 CCDC170Q8IYT3 715 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 ADGRF4Q8IZF3 695 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 DEFB119Q8N690 84 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 TERB1Q8NA31 727 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 KIF18AQ8NI77 898 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 FAM110DQ8TAY7 271 aaPredicted RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 DEPDC1BQ8WUY9 529 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 CAVIN3Q969G5 261 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 RFKQ969G6 155 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 CCDC47Q96A33 483 aaKnown RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 PTERQ96BW5 349 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 TCEAL4Q96EI5 215 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 ELMOD3Q96FG2 381 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 ZFYVE19Q96K21 471 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 NUDCD1Q96RS6 583 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 FNBP1Q96RU3 617 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 PAFAH2Q99487 392 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 THUMPD3Q9BV44 507 aaKnown RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 TRMT61BQ9BVS5 477 aaKnown RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 RIOX1Q9H6W3 641 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 ERAP1Q9NZ08 941 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 ICKQ9UPZ9 632 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 EXOC6BQ9Y2D4 811 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 DTX4Q9Y2E6 619 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 PRG3Q9Y2Y8 225 aaPredicted RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 ZFP37Q9Y6Q3 630 aaPredicted RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 MAU2Q9Y6X3 613 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 EVPLQ92817 2033 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 THADAQ6YHU6 1953 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 ABCB11O95342 1321 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 ATXN2Q99700 1313 aaKnown RBP3.78□□□□□ -1.8
LIMA1-208ENST00000551691 A0A0U1RQF3 1178 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 SMIM35A0A1B0GVV1 85 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 GRID2IPA4D2P6 1211 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 A8MXE2 369 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 CDRT15L2A8MXV6 281 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 VWC2LB2RUY7 222 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 AKR1B15C9JRZ8 316 aaPredicted RBP3.78□□□□□ -1.8
LIMA1-208ENST00000551691 PLK4O00444 970 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 ATP2C2O75185 946 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 OR2C1O95371 312 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 MBPP02686 304 aaPredicted RBP3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms