RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 TTC30BQ8N4P2 665 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 GPR26Q8NDV2 337 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 SLC22A17Q8WUG5 538 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 ISOC1Q96CN7 298 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 MRGBPQ9NV56 204 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 GNPTGQ9UJJ9 305 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 DLGAP4Q9Y2H0 992 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 DHRS7Q9Y394 339 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 NINQ8N4C6 2090 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 F5P12259 2224 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 FAM155AB1AL88 458 aaPredicted RBP13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 CCL16O15467 120 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 XPNPEP2O43895 674 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 MITFO75030 526 aaPredicted RBP13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 XYLBO75191 536 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 SERPINA1P01009 418 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 PGRP06401 933 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 CR2P20023 1033 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 AGXTP21549 392 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 CAPGP40121 348 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 GNPDA1P46926 289 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 PPP3CCP48454 512 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 ACVR1Q04771 509 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 TNK2Q07912 1038 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 ZCCHC8Q6NZY4 707 aaKnown RBP13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 TRAF7Q6Q0C0 670 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 CYB5D2Q8WUJ1 264 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 TOR3AQ9H497 397 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 CARS2Q9HA77 564 aaKnown RBP13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 LSM7Q9UK45 103 aaKnown RBP13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 BAG5Q9UL15 447 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 VPS4BO75351 444 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 ATE1O95260 518 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 S100A3P33764 101 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 MRPL58Q14197 206 aaKnown RBP13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 RAB39AQ14964 217 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 OR4F3Q6IEY1 312 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 SUSD1Q6UWL2 747 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 TBC1D21Q8IYX1 336 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 ANKFN1Q8N957 763 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 OSCP1Q8WVF1 389 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 MRPS31Q92665 395 aaKnown RBP13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 SLC47A1Q96FL8 570 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 ANKRD60Q9BZ19 345 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 FNIP2Q9P278 1114 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 LHX3Q9UBR4 397 aa13.39□□□□□ -0.27
PRPF40B-209ENST00000548825 ZNF236Q9UL36 1845 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 LSM1O15116 133 aaKnown RBP13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 HSD17B1P14061 328 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 HOXD10P28358 340 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 SHMT2P34897 504 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 HMGCLP35914 325 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 TXNL4AP83876 142 aaKnown RBP13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 CYP4F3Q08477 520 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 LMAN2Q12907 356 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 DCTN2Q13561 401 aaKnown RBP13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 DGKKQ5KSL6 1271 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 LCN8Q6JVE9 175 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 EFL1Q7Z2Z2 1120 aaKnown RBP13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 ZFAND4Q86XD8 727 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 ZSWIM9Q86XI8 627 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 SLC44A2Q8IWA5 706 aaPredicted RBP13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 COPS8Q99627 209 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 VN1R3Q9BXE9 311 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 ZNF451Q9Y4E5 1061 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 IFRD1O00458 451 aaPredicted RBP13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 TAPBPO15533 448 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 PGLSO95336 258 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 GPIP06744 558 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 CD247P20963 164 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 OCA2Q04671 838 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 GPNMBQ14956 572 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 PTCHD3Q3KNS1 767 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 DOK6Q6PKX4 331 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 TRIM74Q86UV6 250 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 IGSF21Q96ID5 467 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 ZNF382Q96SR6 550 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 MRPL17Q9NRX2 175 aaKnown RBP13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 HCFC1R1Q9NWW0 138 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 NUDT4Q9NZJ9 180 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 SH3BP4Q9P0V3 963 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 ATG2BQ96BY7 2078 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 DLGAP1O14490 977 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 EEDO75530 441 aaKnown RBP13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 WISP3O95389 354 aaPredicted RBP13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 RPLP2P05387 115 aaKnown RBP13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 ANXA5P08758 320 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 PREPP48147 710 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 ARSFP54793 590 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 APOFQ13790 326 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 SNX29P2Q8IUI4 249 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 VRK3Q8IV63 474 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 C10orf111Q8N326 155 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 LILRA3Q8N6C8 439 aaPredicted RBP13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 HJURPQ8NCD3 748 aaPredicted RBP13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 CHST14Q8NCH0 376 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 CNIH3Q8TBE1 160 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 ELMO1Q92556 727 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 TOP1MTQ969P6 601 aa13.38□□□□□ -0.27
PRPF40B-209ENST00000548825 SPATA17Q96L03 361 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms