RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 CASTOR2A6NHX0 329 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 CAPN14A8MX76 684 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 TMCC2O75069 709 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 EFCAB14O75071 495 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 IPO13O94829 963 aaKnown RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 LRIG2O94898 1065 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 ARIH2O95376 493 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 ANGPTL1O95841 491 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PRKCGP05129 697 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 ENO2P09104 434 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 THRBP10828 461 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 HOXD12P35452 270 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 CD86P42081 329 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 NDUFV1P49821 464 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 ERVK-21P61565 698 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 VBP1P61758 197 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 SP2Q02086 613 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 MAP4K2Q12851 820 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PRKG2Q13237 762 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 ARHGEF6Q15052 776 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 MAPKAPK3Q16644 382 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 MEP1AQ16819 746 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 TRIM71Q2Q1W2 868 aaKnown RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 MARC1Q5VT66 337 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 CACHD1Q5VU97 1274 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 CDPF1Q6NVV7 123 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 MAVSQ7Z434 540 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 ANKRD46Q86W74 232 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 SLC15A4Q8N697 577 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 SCAIQ8N9R8 606 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 ANKRD52Q8NB46 1076 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 C19orf18Q8NEA5 215 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 CMASQ8NFW8 434 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 C19orf60Q96EN9 201 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 B3GALT6Q96L58 329 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 MUS81Q96NY9 551 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 GFM1Q96RP9 751 aaKnown RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 ACO2Q99798 780 aaKnown RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 UGT2B28Q9BY64 529 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 NAA50Q9GZZ1 169 aaKnown RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 C1orf21Q9H246 121 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 IGSF9Q9P2J2 1179 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 DKK3Q9UBP4 350 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 MRPS7Q9Y2R9 242 aaKnown RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PRG3Q9Y2Y8 225 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 SF3B1O75533 1304 aaKnown RBP eCLIP5.39□□□□□ -1.553e-6■■■■■ 137.9
LIMA1-203ENST00000547825 CROCCQ5TZA2 2017 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 H3BN98 237 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PSMD3O43242 534 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 HCRTO43612 131 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 XPNPEP2O43895 674 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 DIRAS1O95057 198 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PRAMEF1O95521 474 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 OXSR1O95747 527 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 F2P00734 622 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 SERPIND1P05546 499 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 GSTM1P09488 218 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 ITGB8P26012 769 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 SLC7A1P30825 629 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PREPP48147 710 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 SERPINH1P50454 418 aaKnown RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 IST1P53990 364 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PHC1P78364 1004 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 CYP4F8P98187 520 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 RHDQ02161 417 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 ARHGAP1Q07960 439 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 EFEMP1Q12805 493 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 EPS8Q12929 822 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 RAB39AQ14964 217 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 LRRC26Q2I0M4 334 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 CCNYL2Q5T2Q4 361 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 TMEM236Q5W0B7 351 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 CNSTQ6PJW8 725 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 ABI1Q8IZP0 508 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 CLYBLQ8N0X4 340 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 MARVELD2Q8N4S9 558 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 CLRN3Q8NCR9 226 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 SUN5Q8TC36 379 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 MCOLN3Q8TDD5 553 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 ASZ1Q8WWH4 475 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 HDAC2Q92769 488 aaKnown RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 C18orf25Q96B23 403 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 REXO5Q96IC2 774 aaKnown RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PEBP4Q96S96 227 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 HDHD2Q9H0R4 259 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 SEMA6CQ9H3T2 930 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 CATSPERBQ9H7T0 1116 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 SMURF2Q9HAU4 748 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 BPIFA1Q9NP55 256 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 COQ3Q9NZJ6 369 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PDE10AQ9Y233 779 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PRELID1Q9Y255 219 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 VWA7Q9Y334 891 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 NFASCO94856 1347 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 A0A1W2PQ67 120 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 SMIM30A4D0T7 59 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 C2CD4BA6NLJ0 364 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PRR23D1E9PI22 279 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 KLF11O14901 512 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PIP5K1BO14986 540 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms