RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CHDHQ8NE62 594 aaPredicted RBP5.17□□□□□ -1.58
USP28-213ENST00000544967 BPIFB6Q8NFQ5 453 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 OR6C4Q8NGE1 309 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 C2orf15Q8WU43 125 aaKnown RBP5.17□□□□□ -1.58
USP28-213ENST00000544967 FAR1Q8WVX9 515 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 CERS2Q96G23 380 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ST6GAL2Q96JF0 529 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 NODALQ96S42 347 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 GPR22Q99680 433 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 NPAS2Q99743 824 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 MSTO1Q9BUK6 570 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ING2Q9H160 280 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 NOL6Q9H6R4 1146 aaKnown RBP5.17□□□□□ -1.58
USP28-213ENST00000544967 ZNF556Q9HAH1 456 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 PACSIN3Q9UKS6 424 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 USP18Q9UMW8 372 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 PCDHB3Q9Y5E6 796 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 PMF1-BGLAPU3KQ54 211 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 FAM170BA6NMN3 283 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 KCNU1A8MYU2 1149 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 TISP43B9A030 160 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 B9A039 149 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 H7C0C1 242 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 KCNN4O15554 427 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 SOCS5O75159 536 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 VPS4BO75351 444 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 SLITRK5O94991 958 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 TRIM16O95361 564 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 MAP3K6O95382 1288 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 VNN1O95497 513 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 CA3P07451 260 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 HTR1AP08908 422 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 RPS2P15880 293 aaKnown RBP5.17□□□□□ -1.58
USP28-213ENST00000544967 HLA-FP30511 346 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 MAGEA11P43364 429 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 GRIA4P48058 902 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 AFF1P51825 1210 aaKnown RBP5.17□□□□□ -1.58
USP28-213ENST00000544967 EPHA5P54756 1037 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 SMARCB1Q12824 385 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 DNASE1L3Q13609 305 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 TIGD5Q53EQ6 642 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ARL13AQ5H913 290 aaPredicted RBP5.17□□□□□ -1.58
USP28-213ENST00000544967 TDRD10Q5VZ19 366 aaKnown RBP5.17□□□□□ -1.58
USP28-213ENST00000544967 LRRC8EQ6NSJ5 796 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 KCNT2Q6UVM3 1135 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 SCARA5Q6ZMJ2 495 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 NUP54Q7Z3B4 507 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 R3HCC1LQ7Z5L2 792 aaKnown RBP5.17□□□□□ -1.58
USP28-213ENST00000544967 ZNF280BQ86YH2 543 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 NATD1Q8N6N6 113 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 C1orf127Q8N9H9 656 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 PSD4Q8NDX1 1056 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 C3orf58Q8NDZ4 430 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ZSWIM2Q8NEG5 633 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 OR10Z1Q8NGY1 313 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 HMGCLL1Q8TB92 370 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 SPPL2BQ8TCT7 592 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ARNTL2Q8WYA1 636 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 MSLNLQ96KJ4 702 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ZNF558Q96NG5 402 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 RTP3Q9BQQ7 232 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 UGT2B28Q9BY64 529 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ACE2Q9BYF1 805 aaPredicted RBP5.17□□□□□ -1.58
USP28-213ENST00000544967 PCDHAC1Q9H158 963 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 NKX2-4Q9H2Z4 354 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 DPEP3Q9H4B8 488 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 DUSP21Q9H596 190 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 KAT8Q9H7Z6 458 aaKnown RBP5.17□□□□□ -1.58
USP28-213ENST00000544967 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.17□□□□□ -1.58
USP28-213ENST00000544967 NDFIP2Q9NV92 336 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 EIF3KQ9UBQ5 218 aaKnown RBP5.17□□□□□ -1.58
USP28-213ENST00000544967 DUSP12Q9UNI6 340 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 A0A096LPK6 155 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 TUBAL3A6NHL2 446 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 PDZK1P1A8MUH7 402 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 STX16-NPEPL1H3BU86 382 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 UBDO15205 165 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 SEC14L5O43304 696 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 SOAT2O75908 522 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 TSPAN9O75954 239 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 MED26O95402 600 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 VNN2O95498 520 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ASS1P00966 412 aaKnown RBP5.17□□□□□ -1.58
USP28-213ENST00000544967 THP07101 528 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 CXCL8P10145 99 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 NELFEP18615 380 aaKnown RBP5.17□□□□□ -1.58
USP28-213ENST00000544967 HLA-DMAP28067 261 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 RPIAP49247 311 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 DSG2Q14126 1118 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 LEXMQ3ZCV2 418 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 UBE2UQ5VVX9 321 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 STEAP3Q658P3 488 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 DESI1Q6ICB0 168 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 JADE1Q6IE81 842 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 NEK5Q6P3R8 708 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ARHGAP11AQ6P4F7 1023 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 TMEM270Q6UE05 265 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ISLR2Q6UXK2 745 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ZNF782Q6ZMW2 699 aaPredicted RBP5.17□□□□□ -1.58
USP28-213ENST00000544967 TMEM135Q86UB9 458 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms