RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, human

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-208	ENST00000541259	CCSMST1	Q4G0I0	132 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	CAPRIN2	Q6IMN6	1127 aa	Known RBP	9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	DUS1L	Q6P1R4	473 aa	Known RBP	9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	RABEPK	Q7Z6M1	372 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	ISCA2	Q86U28	154 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	RASGRP3	Q8IV61	690 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	MYO1H	Q8N1T3	1032 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	SLC25A45	Q8N413	288 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	TMEM151A	Q8N4L1	468 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	ZNF548	Q8NEK5	533 aa	Predicted RBP	9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	TCP10L	Q8TDR4	215 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	SKA2	Q8WVK7	121 aa	Predicted RBP	9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	PATE1	Q8WXA2	126 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	DLG3	Q92796	817 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	PDLIM5	Q96HC4	596 aa	Known RBP	9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	APOPT1	Q96IL0	206 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	GSDMC	Q9BYG8	508 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	DERL2	Q9GZP9	239 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	STMN4	Q9H169	189 aa	Predicted RBP	9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	ALG9	Q9H6U8	611 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	NMRAL1	Q9HBL8	299 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	KCNK9	Q9NPC2	374 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	SENP1	Q9P0U3	644 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	SLC17A7	Q9P2U7	560 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	SPAST	Q9UBP0	616 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	DCDC2	Q9UHG0	476 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	GMEB2	Q9UKD1	530 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	ACSL5	Q9ULC5	683 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	PCDHGA5	Q9Y5G8	931 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	ACTL7B	Q9Y614	415 aa		9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	CFAP20	Q9Y6A4	193 aa	Known RBP	9.12	□□□□□ -0.95
DDX55-208	ENST00000541259	UNC13C	Q8NB66	2214 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259		A0A1B0GTQ1	180 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	KLHL33	A6NCF5	533 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259		A6NCN8	305 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	OR52A4P	A6NMU1	304 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	HMGB1P1	B2RPK0	211 aa	Predicted RBP	9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	GFY	I3L273	518 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	EIF3F	O00303	357 aa	Predicted RBP	9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	BTN3A1	O00481	513 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	KHNYN	O15037	678 aa	Known RBP	9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	YY2	O15391	372 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	GLRA3	O75311	464 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	MATN4	O95460	622 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	RET	P07949	1114 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	GSTA1	P08263	222 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	GIMD1	P0DJR0	217 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	ENO3	P13929	434 aa	Predicted RBP	9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	ENG	P17813	658 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	HPD	P32754	393 aa	Predicted RBP	9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	NBL1	P41271	181 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	BDKRB1	P46663	353 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	CCT5	P48643	541 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	ATP6V0D1	P61421	351 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	SH3BP2	P78314	561 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	ELOC	Q15369	112 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	SF3A2	Q15428	464 aa	Known RBP	9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	RPE65	Q16518	533 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	FAM83E	Q2M2I3	478 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	DEFB133	Q30KQ1	61 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	UAP1L1	Q3KQV9	507 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	TECRL	Q5HYJ1	363 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	AGAP9	Q5VTM2	703 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	LRRC8E	Q6NSJ5	796 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	LVRN	Q6Q4G3	990 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	SBSN	Q6UWP8	590 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	LIAT1	Q6ZQX7	453 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	NEK10	Q6ZWH5	1172 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	UBE2R2	Q712K3	238 aa	Predicted RBP	9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	KANSL1	Q7Z3B3	1105 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	CCDC91	Q7Z6B0	441 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	PDZD3	Q86UT5	571 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	GATAD2A	Q86YP4	633 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	CNPY4	Q8N129	248 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	FSTL5	Q8N475	847 aa	Predicted RBP	9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	FAM46D	Q8NEK8	389 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	ASB11	Q8WXH4	323 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	TFG	Q92734	400 aa	Predicted RBP	9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	ALKBH8	Q96BT7	664 aa	Known RBP	9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	SCYL1	Q96KG9	808 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	C12orf66	Q96MD2	445 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	FAM111A	Q96PZ2	611 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	NRTN	Q99748	197 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	GTPBP2	Q9BX10	602 aa	Known RBP	9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	NUSAP1	Q9BXS6	441 aa	Known RBP	9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	DPEP2	Q9H4A9	486 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	TFB2M	Q9H5Q4	396 aa	Known RBP	9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	SSU72	Q9NP77	194 aa	Known RBP	9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	MKS1	Q9NXB0	559 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	CPSF2	Q9P2I0	782 aa	Known RBP	9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	ZNF624	Q9P2J8	865 aa	Predicted RBP	9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	CIDEB	Q9UHD4	219 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	PCOLCE2	Q9UKZ9	415 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	GRID1	Q9ULK0	1009 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	PLLP	Q9Y342	182 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	EP300	Q09472	2414 aa	Predicted RBP	9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	HEATR5B	Q9P2D3	2071 aa		9.11	□□□□□ -0.95
DDX55-208	ENST00000541259	TMEM120B	A0PK00	339 aa		9.1	□□□□□ -0.95
DDX55-208	ENST00000541259	NEMP2	A6NFY4	417 aa		9.1	□□□□□ -0.95

Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms