RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 GPAMQ9HCL2 828 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 ZNF624Q9P2J8 865 aaPredicted RBP17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 PSMC3IPQ9P2W1 217 aaPredicted RBP17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 TLK1Q9UKI8 766 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 SLC39A10Q9ULF5 831 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 CDYLQ9Y232 598 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 WDR37Q9Y2I8 494 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 ARHGEF17Q96PE2 2063 aaPredicted RBP17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 ARID1BQ8NFD5 2236 aaPredicted RBP17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 A0A087X1B8 175 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 POC1B-GALNT4F8VUJ3 575 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 CDH16O75309 829 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 KCNK5O95279 499 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 ENO2P09104 434 aaPredicted RBP17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 CYP2A7P20853 494 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 PDHA2P29803 388 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 HSD17B3P37058 310 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 PREPP48147 710 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 ACADVLP49748 655 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 SERPINB8P50452 374 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 IFFO1Q0D2I5 559 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 EFL1Q7Z2Z2 1120 aaKnown RBP17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 GSPT2Q8IYD1 628 aaKnown RBP17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 PNPLA1Q8N8W4 532 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 SIDT2Q8NBJ9 832 aaKnown RBP17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 MCOLN3Q8TDD5 553 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 RMDN2Q96LZ7 410 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 KCNK4Q9NYG8 393 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 LNPEPQ9UIQ6 1025 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 RALYQ9UKM9 306 aaKnown RBP17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 MED16Q9Y2X0 877 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 FRYQ5TBA9 3013 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 ATRXP46100 2492 aa17.08■□□□□ 0.32
CLSTN3-210ENST00000540931 OR52A4PA6NMU1 304 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 DUX1O43812 170 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 MPOP05164 745 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 HIST1H2AGP0C0S8 130 aaPredicted RBP17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 ZNF37AP17032 561 aaPredicted RBP17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 HIST1H2ADP20671 130 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 SHMT2P34897 504 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 KPNA2P52292 529 aaKnown RBP17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 CDKN2DP55273 166 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 ATP6V0D1P61421 351 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 PLCL1Q15111 1095 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 ZKSCAN8Q15776 578 aaPredicted RBP17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 RBM20Q5T481 1227 aaKnown RBP17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 RAPH1Q70E73 1250 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 TBC1D1Q86TI0 1168 aaPredicted RBP17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 CARFQ8N187 725 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 LKAAEAR1Q8TD35 194 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 SLC22A18Q96BI1 424 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 ATXN7L3BQ96GX2 97 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 HIST1H2AHQ96KK5 128 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 TSNARE1Q96NA8 513 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 HIST1H2AJQ99878 128 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 H2AFJQ9BTM1 129 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 DHRS4Q9BTZ2 278 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 RAB33BQ9H082 229 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 NOVA2Q9UNW9 492 aaKnown RBP17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 MTO1Q9Y2Z2 717 aaKnown RBP17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 ACOT9Q9Y305 439 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 ENTPD2Q9Y5L3 495 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 RNF215Q9Y6U7 377 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 LAMA1P25391 3075 aa17.07■□□□□ 0.32
CLSTN3-210ENST00000540931 LY6G6EA0A0G2JKS1 128 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 PSIP1O75475 530 aaKnown RBP17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 COL6A2P12110 1019 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 AMD1P17707 334 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 SAT1P21673 171 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 TYK2P29597 1187 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 MAZP56270 477 aaKnown RBP17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 AP1S2P56377 157 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 TAS2R39P59534 338 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 SIM1P81133 766 aaPredicted RBP17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 PRKAA1Q13131 559 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 ARHGAP19Q14CB8 494 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 FAM83EQ2M2I3 478 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 ACSBG2Q5FVE4 666 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 ARMC6Q6NXE6 501 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 GUSBP11Q6P575 273 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 KLC3Q6P597 504 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 PAQR3Q6TCH7 311 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 SPRED1Q7Z699 444 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 PLXDC1Q8IUK5 500 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 GALNT15Q8N3T1 639 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 ACMSDQ8TDX5 336 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 ASB11Q8WXH4 323 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 CCDC74AQ96AQ1 378 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 CAMK1GQ96NX5 476 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 CCDC3Q9BQI4 270 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 DERL2Q9GZP9 239 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 OR6C2Q9NZP2 312 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 SCHIP1Q9P0W5 487 aaPredicted RBP17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 SPATA7Q9P0W8 599 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 SLC17A6Q9P2U8 582 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 U3KQA8 63 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 BAHCC1Q9P281 2608 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 PCNX2A6NKB5 2137 aa17.06■□□□□ 0.32
CLSTN3-210ENST00000540931 TRBV23OR9-2A0A075B6M9 112 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms