RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	IMP3	Q9NV31	184 aa	Known RBP	11.23	□□□□□ -0.61
CTNND1-238	ENST00000534647	UBP1	Q9NZI7	540 aa		11.23	□□□□□ -0.61
CTNND1-238	ENST00000534647	FAM8A1	Q9UBU6	413 aa		11.23	□□□□□ -0.61
CTNND1-238	ENST00000534647	TCFL5	Q9UL49	500 aa		11.23	□□□□□ -0.61
CTNND1-238	ENST00000534647	HYOU1	Q9Y4L1	999 aa		11.23	□□□□□ -0.61
CTNND1-238	ENST00000534647	CAPN6	Q9Y6Q1	641 aa		11.23	□□□□□ -0.61
CTNND1-238	ENST00000534647	COLEC10	Q9Y6Z7	277 aa		11.23	□□□□□ -0.61
CTNND1-238	ENST00000534647	ICE1	Q9Y2F5	2266 aa		11.23	□□□□□ -0.61
CTNND1-238	ENST00000534647	OR6C74	A6NCV1	312 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	WIPF3	A6NGB9	483 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	ARGFX	A6NJG6	315 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	OR2AG2	A6NM03	316 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	FANCG	O15287	622 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	TMEM63A	O94886	807 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	KRT1	P04264	644 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	CAPN1	P07384	714 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	PCSK2	P16519	638 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	TCP1	P17987	556 aa	Known RBP	11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	NFKB1	P19838	968 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	MSH3	P20585	1137 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	PTGIR	P43119	386 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	CHRNA4	P43681	627 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	TNNT3	P45378	269 aa	Predicted RBP	11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	KPNA2	P52292	529 aa	Known RBP	11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	ADCY2	Q08462	1091 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	MPP3	Q13368	585 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	LINC01559	Q495D7	138 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	FNBP1L	Q5T0N5	605 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	ARMC6	Q6NXE6	501 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	MFSD7	Q6UXD7	560 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	GLT6D1	Q7Z4J2	308 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	PMM1	Q92871	262 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	OXNAD1	Q96HP4	312 aa	Predicted RBP	11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	C12orf66	Q96MD2	445 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	SMAD5	Q99717	465 aa	Known RBP	11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	DPH2	Q9BQC3	489 aa	Predicted RBP	11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	CCM2	Q9BSQ5	444 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	WWP1	Q9H0M0	922 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	C5AR2	Q9P296	337 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	TRHDE	Q9UKU6	1024 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	POMT2	Q9UKY4	750 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	HEBP2	Q9Y5Z4	205 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	MYO9A	B2RTY4	2548 aa		11.22	□□□□□ -0.61
CTNND1-238	ENST00000534647	C17orf113	A0A1B0GUU1	675 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	C5orf60	A6NFR6	353 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	HACD1	B0YJ81	288 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	TCP11X1	B4DZS4	312 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	GPR39	O43194	453 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	SGTA	O43765	313 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	SEMA7A	O75326	666 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	SLC35G4	P0C7Q5	338 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	RRAD	P55042	308 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	DYNLT1	P63172	113 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	NOMO1	Q15155	1222 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	ODF2	Q5BJF6	829 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	ZNF789	Q5FWF6	425 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	LCN10	Q6JVE6	187 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	B4GALNT4	Q76KP1	1039 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	PID1	Q7Z2X4	250 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	ZNF567	Q8N184	647 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	SLC25A41	Q8N5S1	370 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	ENDOV	Q8N8Q3	282 aa	Known RBP	11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647		Q8NA96	180 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	ACVR1C	Q8NER5	493 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	BLOC1S5	Q8TDH9	187 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	PNPLA2	Q96AD5	504 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	IP6K3	Q96PC2	410 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	PITPNM3	Q9BZ71	974 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	FANCE	Q9HB96	536 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	SAE1	Q9UBE0	346 aa	Predicted RBP	11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	SNX7	Q9UNH6	387 aa		11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	CFAP20	Q9Y6A4	193 aa	Known RBP	11.21	□□□□□ -0.61
CTNND1-238	ENST00000534647	CTAGE15	A4D2H0	777 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	GRID2IP	A4D2P6	1211 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	SLC9B1P1	A6NJY1	282 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647		A6NJY4	79 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	C2orf81	A6NN90	581 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	EFCAB8	A8MWE9	144 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	STX7	O15400	261 aa	Known RBP	11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	CTIF	O43310	598 aa	Known RBP	11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	CST8	O60676	142 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	SRP72	O76094	671 aa	Known RBP	11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	PRAMEF1	O95521	474 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	FTCD	O95954	541 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	HBQ1	P09105	142 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	CTAGE8	P0CG41	777 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	PECAM1	P16284	738 aa	Predicted RBP	11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	HADHA	P40939	763 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	PAFAH1B1	P43034	410 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	ITGA1	P56199	1179 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	ABR	Q12979	859 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	CHAF1B	Q13112	559 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	PRKAA1	Q13131	559 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	RPS6KA1	Q15418	735 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	TAF1A	Q15573	450 aa	Predicted RBP	11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	RANBP10	Q6VN20	620 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	PEX26	Q7Z412	305 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	DAAM2	Q86T65	1068 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	CTAGE6	Q86UF2	777 aa		11.2	□□□□□ -0.62
CTNND1-238	ENST00000534647	CTAGE4	Q8IX94	777 aa		11.2	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms