RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 SLC41A1Q8IVJ1 513 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 PELI3Q8N2H9 469 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 PNPLA1Q8N8W4 532 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 RASGEF1AQ8N9B8 481 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 GOLM1Q8NBJ4 401 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 MZB1Q8WU39 189 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 FBLIM1Q8WUP2 373 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 ASZ1Q8WWH4 475 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 GATAD2BQ8WXI9 593 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 KCNJ9Q92806 393 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 INPP5DQ92835 1189 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 SGF29Q96ES7 293 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 PLPPR2Q96GM1 343 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 UBXN10Q96LJ8 280 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 CCM2Q9BSQ5 444 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 BOCQ9BWV1 1114 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 ARRDC1-AS1Q9H2J1 176 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 WDR26Q9H7D7 661 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 SSU72Q9NP77 194 aaKnown RBP7.27□□□□□ -1.25
CD44-228ENST00000528455 SPATS2LQ9NUQ6 558 aaKnown RBP7.27□□□□□ -1.25
CD44-228ENST00000528455 EIF2B4Q9UI10 523 aaKnown RBP7.27□□□□□ -1.25
CD44-228ENST00000528455 GNPTGQ9UJJ9 305 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 TLK1Q9UKI8 766 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 GRID1Q9ULK0 1009 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 ACOT9Q9Y305 439 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 PCDHGA5Q9Y5G8 931 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 DNAH14Q0VDD8 3507 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.26□□□□□ -1.25
CD44-228ENST00000528455 SPTY2D1-AS1A0A0U1RR47 76 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 LOC105378220A0A1B0GUY1 285 aaPredicted RBP7.26□□□□□ -1.25
CD44-228ENST00000528455 A0A1W2PPM1 405 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 MGAT4DA6NG13 374 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 TMEM202A6NGA9 273 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 A6NNZ2 444 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 HMGB1P1B2RPK0 211 aaPredicted RBP7.26□□□□□ -1.25
CD44-228ENST00000528455 EIF3FO00303 357 aaPredicted RBP7.26□□□□□ -1.25
CD44-228ENST00000528455 KMOO15229 486 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 GRID2O43424 1007 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 DNAJC6O75061 913 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 VPS26AO75436 327 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 POP7O75817 140 aaKnown RBP7.26□□□□□ -1.25
CD44-228ENST00000528455 EPN2O95208 641 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 FUCA1P04066 466 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 ALDOAP04075 364 aaKnown RBP7.26□□□□□ -1.25
CD44-228ENST00000528455 C2P06681 752 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 CEACAM5P06731 702 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 GSTA1P08263 222 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 ZNF806P0C7X5 589 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 CBSLP0DN79 551 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 ZNF8P17098 575 aaPredicted RBP7.26□□□□□ -1.25
CD44-228ENST00000528455 KRT4P19013 534 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 DGKAP23743 735 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 MAP4P27816 1152 aaKnown RBP7.26□□□□□ -1.25
CD44-228ENST00000528455 AOAHP28039 575 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 CBSP35520 551 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 MAGEA12P43365 314 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 SERPINB8P50452 374 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 BLKP51451 505 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 THOP1P52888 689 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 CLDN2P57739 230 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 TAS2R39P59534 338 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 RAB10P61026 200 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 TIAL1Q01085 375 aaKnown RBP eCLIP7.26□□□□□ -1.25
CD44-228ENST00000528455 NFATC4Q14934 902 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 ZKSCAN8Q15776 578 aaPredicted RBP7.26□□□□□ -1.25
CD44-228ENST00000528455 BCL7AQ4VC05 210 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 KHDC1Q4VXA5 237 aaKnown RBP7.26□□□□□ -1.25
CD44-228ENST00000528455 HSP90B2PQ58FF3 399 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 PPM1JQ5JR12 505 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 WIPI1Q5MNZ9 446 aaPredicted RBP7.26□□□□□ -1.25
CD44-228ENST00000528455 CTSL3PQ5NE16 218 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 SNAP47Q5SQN1 464 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 PLEKHS1Q5SXH7 462 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 KYAT3Q6YP21 454 aaKnown RBP7.26□□□□□ -1.25
CD44-228ENST00000528455 GCNT7Q6ZNI0 430 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 EXOC3L1Q86VI1 746 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 TMEFF1Q8IYR6 380 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 SDR16C5Q8N3Y7 309 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 NKAPQ8N5F7 415 aaKnown RBP7.26□□□□□ -1.25
CD44-228ENST00000528455 DEFB119Q8N690 84 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 OR56A4Q8NGH8 313 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 NETO1Q8TDF5 533 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 ARL8AQ96BM9 186 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 TLCD1Q96CP7 247 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 ELMO2Q96JJ3 720 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 ATP6V1G3Q96LB4 118 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 RTKNQ9BST9 563 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 OR2AG1Q9H205 316 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 CENPHQ9H3R5 247 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 GPR27Q9NS67 375 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 SLC17A6Q9P2U8 582 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 CTNNAL1Q9UBT7 734 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 SLC39A10Q9ULF5 831 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 ANKRD6Q9Y2G4 727 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 MED16Q9Y2X0 877 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 TMEM98Q9Y2Y6 226 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 OR1A2Q9Y585 309 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 OAS3Q9Y6K5 1087 aaKnown RBP7.26□□□□□ -1.25
CD44-228ENST00000528455 PRSS21Q9Y6M0 314 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms