RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 LMAN2Q12907 356 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 CDH18Q13634 790 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 KCNC3Q14003 757 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 HNRNPDQ14103 355 aaKnown RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 PRPSAP1Q14558 356 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 ZNF235Q14590 738 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 PLCL1Q15111 1095 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 ZNF77Q15935 545 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 FLYWCH1Q4VC44 716 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 C19orf54Q5BKX5 351 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 TCEAL5Q5H9L2 206 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 CERCAMQ5T4B2 595 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 AGBL2Q5U5Z8 902 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 MARC1Q5VT66 337 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 KCTD11Q693B1 232 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 LRRC8BQ6P9F7 803 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 TRMT10BQ6PF06 316 aaKnown RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 KDELC1Q6UW63 502 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 ABRAXAS1Q6UWZ7 409 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 CCBE1Q6UXH8 406 aaPredicted RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 LINGO4Q6UY18 593 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 RPTNQ6XPR3 784 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 C1orf122Q6ZSJ8 110 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 C3orf62Q6ZUJ4 267 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 RTL10Q7L3V2 364 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 PRPF39Q86UA1 669 aaKnown RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 TMEM25Q86YD3 366 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 FAM90A1Q86YD7 464 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 LRRC49Q8IUZ0 686 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 ARID3BQ8IVW6 561 aaPredicted RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 MFN1Q8IWA4 741 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 FAM217AQ8IXS0 508 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 APCDD1Q8J025 514 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 LILRA2Q8N149 483 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 CPXM2Q8N436 756 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 SLC25A41Q8N5S1 370 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 DNAAF3Q8N9W5 541 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 ATG16L2Q8NAA4 619 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 LEMD2Q8NC56 503 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 FAM76AQ8TAV0 307 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 BRIX1Q8TDN6 353 aaKnown RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 DDI1Q8WTU0 396 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 NSMCE1Q8WV22 266 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 SNX33Q8WV41 574 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 ANKRD49Q8WVL7 239 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 MRPL38Q96DV4 380 aaKnown RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 RSPRY1Q96DX4 576 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 TMA16Q96EY4 203 aaKnown RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 STAMBPL1Q96FJ0 436 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 IMP4Q96G21 291 aaKnown RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 CCDC120Q96HB5 630 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 HIC2Q96JB3 615 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 NSMCE3Q96MG7 304 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 LRRC3BQ96PB8 259 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 XPO6Q96QU8 1125 aaKnown RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 FCRL5Q96RD9 977 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 VAT1Q99536 393 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 EBNA1BP2Q99848 306 aaKnown RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 SEMA3CQ99985 751 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 CINPQ9BW66 212 aaPredicted RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 SORBS1Q9BX66 1292 aaKnown RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 OSBPL6Q9BZF3 934 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 SLC25A51Q9H1U9 297 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 LINC00597Q9H2U6 94 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 MRPL46Q9H2W6 279 aaKnown RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 LRRC40Q9H9A6 602 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 SFXN1Q9H9B4 322 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 PDFQ9HBH1 243 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 PLAC1Q9HBJ0 212 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 ZNF304Q9HCX3 659 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 SMYD2Q9NRG4 433 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 RASSF1Q9NS23 344 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 SACM1LQ9NTJ5 587 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 MBNL3Q9NUK0 354 aaKnown RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 POLR3BQ9NW08 1133 aaPredicted RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 ZDHHC7Q9NXF8 308 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 IL1RAPL1Q9NZN1 696 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 LRFN1Q9P244 771 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 UBA2Q9UBT2 640 aaPredicted RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 VPS51Q9UID3 782 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 STOML2Q9UJZ1 356 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 VPS28Q9UK41 221 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 SLC39A10Q9ULF5 831 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 ZNF510Q9Y2H8 683 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 CRYL1Q9Y2S2 319 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 WNT6Q9Y6F9 365 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 MYO18BQ8IUG5 2567 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 ARID1BQ8NFD5 2236 aaPredicted RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 ASXL3Q9C0F0 2248 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 SEC16AO15027 2179 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 RP1P56715 2156 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 TCRBV9S1A1TA0A576 114 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 SDR42E2A6NKP2 422 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 ERI2A8K979 691 aaKnown RBP4.14□□□□□ -1.75
CD44-226ENST00000527889 NUDT19A8MXV4 375 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 CXorf49A8MYA2 514 aaPredicted RBP4.14□□□□□ -1.75
CD44-226ENST00000527889 ZNF197O14709 1029 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 TRIM24O15164 1050 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 INSIG1O15503 277 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 PSMD3O43242 534 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms