RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ZNF599Q96NL3 588 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 ABHD6Q9BV23 337 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 COQ3Q9NZJ6 369 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 ZNF69Q9UC07 566 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 CACNG5Q9UF02 275 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 NOL7Q9UMY1 257 aaKnown RBP3.6□□□□□ -1.83
CD44-217ENST00000525348 ITM2BQ9Y287 266 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 SPIN1Q9Y657 262 aaPredicted RBP3.6□□□□□ -1.83
CD44-217ENST00000525348 RSF1Q96T23 1441 aaPredicted RBP3.6□□□□□ -1.83
CD44-217ENST00000525348 ANTXRLA6NF34 631 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 H0YHG0 523 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 KINO60870 393 aaKnown RBP3.59□□□□□ -1.83
CD44-217ENST00000525348 CLPTM1O96005 669 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 H1F0P07305 194 aaKnown RBP3.59□□□□□ -1.83
CD44-217ENST00000525348 CAPN3P20807 821 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 ITGA3P26006 1051 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 HOXC13P31276 330 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 CDH11P55287 796 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 SARNPP82979 210 aaKnown RBP3.59□□□□□ -1.83
CD44-217ENST00000525348 MECOMQ03112 1051 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 TRDNQ13061 729 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 KCNC3Q14003 757 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 P2RY6Q15077 328 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 GRTP1Q5TC63 336 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 RSRC2Q7L4I2 434 aaKnown RBP3.59□□□□□ -1.83
CD44-217ENST00000525348 FASTKD5Q7L8L6 764 aaKnown RBP3.59□□□□□ -1.83
CD44-217ENST00000525348 PPHLN1Q8NEY8 458 aaKnown RBP3.59□□□□□ -1.83
CD44-217ENST00000525348 LRRC59Q96AG4 307 aaKnown RBP3.59□□□□□ -1.83
CD44-217ENST00000525348 CENPTQ96BT3 561 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 ERLEC1Q96DZ1 483 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 ART5Q96L15 291 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 CEP295NLQ96MC4 621 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 C16orf70Q9BSU1 422 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 C1QTNF1Q9BXJ1 281 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 HHATLQ9HCP6 504 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 FGF22Q9HCT0 170 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 EIF2B3Q9NR50 452 aaKnown RBP3.59□□□□□ -1.83
CD44-217ENST00000525348 OLFML3Q9NRN5 406 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 TAS2R14Q9NYV8 317 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 TBC1D7Q9P0N9 293 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 RHCGQ9UBD6 479 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 RABL2AQ9UBK7 228 aaPredicted RBP3.59□□□□□ -1.83
CD44-217ENST00000525348 TMCC3Q9ULS5 477 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 EXO1Q9UQ84 846 aaKnown RBP3.59□□□□□ -1.83
CD44-217ENST00000525348 MRPS28Q9Y2Q9 187 aaKnown RBP3.59□□□□□ -1.83
CD44-217ENST00000525348 KIF3AQ9Y496 699 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 N6AMT1Q9Y5N5 214 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 CACNA1FO60840 1977 aa3.59□□□□□ -1.83
CD44-217ENST00000525348 ASTN2O75129 1339 aaPredicted RBP3.59□□□□□ -1.83
CD44-217ENST00000525348 GAPVD1Q14C86 1478 aa3.59□□□□□ -1.84
CD44-217ENST00000525348 IFT140Q96RY7 1462 aa3.59□□□□□ -1.84
CD44-217ENST00000525348 CLASP1Q7Z460 1538 aa3.59□□□□□ -1.84
CD44-217ENST00000525348 LNP1A1A4G5 178 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 KRTAP16-1A8MUX0 517 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 PTGES3LE9PB15 166 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 DNM1LO00429 736 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 ZNF197O14709 1029 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 PAPSS1O43252 624 aaPredicted RBP3.58□□□□□ -1.84
CD44-217ENST00000525348 MITFO75030 526 aaPredicted RBP3.58□□□□□ -1.84
CD44-217ENST00000525348 CREG1O75629 220 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 BAIAP3O94812 1187 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 CCDC175P0C221 793 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 IL4RP24394 825 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 CEACAM8P31997 349 aaPredicted RBP3.58□□□□□ -1.84
CD44-217ENST00000525348 WNT5AP41221 380 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 SNRPEP62304 92 aaKnown RBP3.58□□□□□ -1.84
CD44-217ENST00000525348 MRPS5P82675 430 aaKnown RBP3.58□□□□□ -1.84
CD44-217ENST00000525348 ITGA9Q13797 1035 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 MELKQ14680 651 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 ZFP69Q49AA0 526 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 FAM98BQ52LJ0 330 aaKnown RBP3.58□□□□□ -1.84
CD44-217ENST00000525348 ARMC3Q5W041 872 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 CORO6Q6QEF8 472 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 CCBE1Q6UXH8 406 aaPredicted RBP3.58□□□□□ -1.84
CD44-217ENST00000525348 MYPOPQ86VE0 399 aaPredicted RBP3.58□□□□□ -1.84
CD44-217ENST00000525348 MCEMP1Q8IX19 187 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 NDUFAF2Q8N183 169 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 DNAJC22Q8N4W6 341 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 CPSF7Q8N684 471 aaKnown RBP3.58□□□□□ -1.84
CD44-217ENST00000525348 ZNF383Q8NA42 475 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 APPL2Q8NEU8 664 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 GRHL3Q8TE85 626 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 ZFAND2BQ8WV99 257 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 FAM81BQ96LP2 452 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 RTP3Q9BQQ7 232 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 CHCHD6Q9BRQ6 235 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 HRH4Q9H3N8 390 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 ACKR4Q9NPB9 350 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 TRPV5Q9NQA5 729 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 DCAF16Q9NXF7 216 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 AMACRQ9UHK6 382 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 RASAL2Q9UJF2 1139 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 RABGAP1Q9Y3P9 1069 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 BRD4O60885 1362 aaPredicted RBP3.58□□□□□ -1.84
CD44-217ENST00000525348 ADGRL1O94910 1474 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 PEG3Q9GZU2 1588 aa3.58□□□□□ -1.84
CD44-217ENST00000525348 IGLV9-49A0A0B4J1Y8 123 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 AGAP14A8MT82 685 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 F8VZ95 297 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 PSMD14O00487 310 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms