RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 TRIM31Q9BZY9 425 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 CSNK1G1Q9HCP0 422 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 TRPC7Q9HCX4 862 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 TLR8Q9NR97 1041 aaKnown RBP7.06□□□□□ -1.28
SDCBP-208ENST00000520228 TMEM160Q9NX00 188 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 WNT16Q9UBV4 365 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 KIAA1257Q9ULG3 409 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 NFE2L3Q9Y4A8 694 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 VWA8A3KMH1 1905 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 TRAV19A0A0A6YYK7 116 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 CCDC189A1A4V9 331 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 ZNF840PA6NDX5 716 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 C17orf100A8MU93 164 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 PES1O00541 588 aaKnown RBP7.05□□□□□ -1.28
SDCBP-208ENST00000520228 ZNF263O14978 683 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 BEST1O76090 585 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 PRAMEF12O95522 483 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 PSMC3P17980 439 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 PTMSP20962 102 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 GDI1P31150 447 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 MAPK9P45984 424 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 RPS6KA3P51812 740 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 SLC8A3P57103 927 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 GCNT1Q02742 428 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 TAF10Q12962 218 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 EXOC3L4Q17RC7 722 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 GXYLT1Q4G148 440 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 TCP11X2Q5H9J9 407 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 MTX3Q5HYI7 312 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 C10orf76Q5T2E6 689 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 VWA5B1Q5TIE3 1220 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 MORN5Q5VZ52 161 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 ARHGAP17Q68EM7 881 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 DENND1BQ6P3S1 775 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 TMEM270Q6UE05 265 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 VITQ6UXI7 678 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 GBP6Q6ZN66 633 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 C11orf57Q6ZUT1 292 aaPredicted RBP7.05□□□□□ -1.28
SDCBP-208ENST00000520228 GALNT7Q86SF2 657 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 CNGA4Q8IV77 575 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 MFSD6LQ8IWD5 586 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 ZMIZ2Q8NF64 920 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 DEPDC1BQ8WUY9 529 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 FBXO32Q969P5 355 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 JAKMIP2Q96AA8 810 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 COQ8BQ96D53 544 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 CYP2S1Q96SQ9 504 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 TUBGCP2Q9BSJ2 902 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 DUSP16Q9BY84 665 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 NAT10Q9H0A0 1025 aaKnown RBP7.05□□□□□ -1.28
SDCBP-208ENST00000520228 NDST4Q9H3R1 872 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 MFSD1Q9H3U5 465 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 FBXO44Q9H4M3 255 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 Q9N2J8 555 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 UBE2TQ9NPD8 197 aaPredicted RBP7.05□□□□□ -1.28
SDCBP-208ENST00000520228 SAMSN1Q9NSI8 373 aaKnown RBP7.05□□□□□ -1.28
SDCBP-208ENST00000520228 TMEM184CQ9NVA4 438 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 COMMD8Q9NX08 183 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 ARL15Q9NXU5 204 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 GCNT4Q9P109 453 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 CHORDC1Q9UHD1 332 aaPredicted RBP7.05□□□□□ -1.28
SDCBP-208ENST00000520228 IPO11Q9UI26 975 aaKnown RBP7.05□□□□□ -1.28
SDCBP-208ENST00000520228 FBXO4Q9UKT5 387 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 TCF20Q9UGU0 1960 aaKnown RBP7.05□□□□□ -1.28
SDCBP-208ENST00000520228 TCHHQ07283 1943 aa7.05□□□□□ -1.28
SDCBP-208ENST00000520228 TRBV5-3A0A0A0MS03 114 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 GTPBP10A4D1E9 387 aaKnown RBP7.04□□□□□ -1.28
SDCBP-208ENST00000520228 LETM1O95202 739 aaPredicted RBP7.04□□□□□ -1.28
SDCBP-208ENST00000520228 METTL18O95568 372 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 PDGFBP01127 241 aaPredicted RBP7.04□□□□□ -1.28
SDCBP-208ENST00000520228 TPM2P07951 284 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 PAEPP09466 180 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 VDRP11473 427 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 KRT5P13647 590 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 TNNT1P13805 278 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 PON1P27169 355 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 MFAP3P55082 362 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 MYL5Q02045 173 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 ID2Q02363 134 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 SRSF7Q16629 238 aaKnown RBP eCLIP7.04□□□□□ -1.28
SDCBP-208ENST00000520228 GOLGA7BQ2TAP0 167 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 KLHL40Q2TBA0 621 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 ARL13AQ5H913 290 aaPredicted RBP7.04□□□□□ -1.28
SDCBP-208ENST00000520228 TRIM65Q6PJ69 517 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 CLEC20AQ6ZU45 233 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 ENOSF1Q7L5Y1 443 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 ANKRD52Q8NB46 1076 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 MAELQ96JY0 434 aaKnown RBP7.04□□□□□ -1.28
SDCBP-208ENST00000520228 FAM81BQ96LP2 452 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 LRRC3BQ96PB8 259 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 SLC22A12Q96S37 553 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 UBXN6Q9BZV1 441 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 KIF9Q9HAQ2 790 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 PAPOLBQ9NRJ5 636 aaKnown RBP7.04□□□□□ -1.28
SDCBP-208ENST00000520228 IL37Q9NZH6 218 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 PDP2Q9P2J9 529 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 SLC25A13Q9UJS0 675 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 GTF2A1LQ9UNN4 478 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 CCL26Q9Y258 94 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 SCN1AP35498 2009 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms