RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 PHF19Q5T6S3 580 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 FAM45BPQ6NSW5 357 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 ARMC6Q6NXE6 501 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 ZNF574Q6ZN55 896 aaPredicted RBP13.88□□□□□ -0.19
NUP54-216ENST00000514901 ZC3HC1Q86WB0 502 aaKnown RBP13.88□□□□□ -0.19
NUP54-216ENST00000514901 OOSP2Q86WS3 158 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 DCUN1D3Q8IWE4 304 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 OR4E2Q8NGC2 313 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 OR5AR1Q8NGP9 310 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 CFAP61Q8NHU2 1237 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 WDR36Q8NI36 951 aaKnown RBP13.88□□□□□ -0.19
NUP54-216ENST00000514901 FAM45AQ8TCE6 357 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 FBF1Q8TES7 1133 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 FAM136AQ96C01 138 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 ATXN7L3BQ96GX2 97 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 CMKLR1Q99788 373 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 CPNE1Q99829 537 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 SEMA6CQ9H3T2 930 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 SRMSQ9H3Y6 488 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 RHOJQ9H4E5 214 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 OGFRQ9NZT2 677 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 GALPQ9UBC7 116 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 NFU1Q9UMS0 254 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 OR5K3A6NET4 321 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 TRABD2BA6NFA1 517 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 CAPN5O15484 640 aaPredicted RBP13.87□□□□□ -0.19
NUP54-216ENST00000514901 SLU7O95391 586 aaKnown RBP13.87□□□□□ -0.19
NUP54-216ENST00000514901 MATN4O95460 622 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 C9P02748 559 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 F7P08709 466 aaPredicted RBP13.87□□□□□ -0.19
NUP54-216ENST00000514901 MPC1LP0DKB6 136 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 THRAP10827 490 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 CSF2RBP32927 897 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 SHMT2P34897 504 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 GP5P40197 560 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 LSSP48449 732 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 RGS4P49798 205 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 PDX1P52945 283 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 PRKAA1Q13131 559 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 PRKG2Q13237 762 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 RTP5Q14D33 572 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 ACSBG2Q5FVE4 666 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 TEX35Q5T0J7 233 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 GRTP1Q5TC63 336 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 HECTD2Q5U5R9 776 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 TMPRSS9Q7Z410 1059 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 B3GNT8Q7Z7M8 397 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 AMIGO1Q86WK6 493 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 CTAGE3PQ8IX95 158 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 LSMEM2Q8N112 164 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 GPATCH11Q8N954 259 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 SIDT2Q8NBJ9 832 aaKnown RBP13.87□□□□□ -0.19
NUP54-216ENST00000514901 LRRN4CLQ8ND94 238 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 OR52E1Q8NGJ3 308 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 CD200R1Q8TD46 325 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.87□□□□□ -0.19
NUP54-216ENST00000514901 RAD51AP1Q96B01 352 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 NXPE2Q96DL1 559 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 VPS39Q96JC1 886 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 CD180Q99467 661 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 NDNQ99608 321 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 HGH1Q9BTY7 390 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 HRASLS2Q9NWW9 162 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 OR6C2Q9NZP2 312 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 SLC17A6Q9P2U8 582 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 PCDHGA8Q9Y5G5 932 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 PSAT1Q9Y617 370 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 MN1Q10571 1320 aaPredicted RBP13.87□□□□□ -0.19
NUP54-216ENST00000514901 KIF26BQ2KJY2 2108 aa13.87□□□□□ -0.19
NUP54-216ENST00000514901 OR6C74A6NCV1 312 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 CXorf49A8MYA2 514 aaPredicted RBP13.86□□□□□ -0.19
NUP54-216ENST00000514901 C1orf105O95561 183 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 FDXRP22570 491 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 CSTF2P33240 577 aaKnown RBP eCLIP13.86□□□□□ -0.19
NUP54-216ENST00000514901 MLLT3P42568 568 aaPredicted RBP13.86□□□□□ -0.19
NUP54-216ENST00000514901 CDKN2DP55273 166 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 TIAL1Q01085 375 aaKnown RBP eCLIP13.86□□□□□ -0.19
NUP54-216ENST00000514901 PDAP1Q13442 181 aaKnown RBP13.86□□□□□ -0.19
NUP54-216ENST00000514901 KLHL38Q2WGJ6 581 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 KBTBD12Q3ZCT8 623 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 RBM20Q5T481 1227 aaKnown RBP13.86□□□□□ -0.19
NUP54-216ENST00000514901 ARHGAP22Q7Z5H3 698 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 MARCH9Q86YJ5 346 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 CARFQ8N187 725 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 FBXO39Q8N4B4 442 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 RAB42Q8N4Z0 105 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 AGBL5Q8NDL9 886 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 GIMAP7Q8NHV1 300 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 RSC1A1Q92681 617 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 CCDC74BQ96LY2 380 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 CYTH2Q99418 400 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 SLC30A3Q99726 388 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 MCMBPQ9BTE3 642 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 RAB11FIP5Q9BXF6 653 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 FUT8Q9BYC5 575 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 POLR1BQ9H9Y6 1135 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 SMYD2Q9NRG4 433 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 NINJ2Q9NZG7 142 aa13.86□□□□□ -0.19
NUP54-216ENST00000514901 TDRKHQ9Y2W6 561 aaKnown RBP13.86□□□□□ -0.19
NUP54-216ENST00000514901 CHD8Q9HCK8 2581 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms