RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 RHPN2P1A8MT19 583 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 APOC4-APOC2K7ER74 178 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 APOC2P02655 101 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 GSSP48637 474 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC9A3P48764 834 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 AIF1P55008 147 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 TPD52P55327 224 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 SRP54P61011 504 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 HNRNPKP61978 463 aaKnown RBP eCLIP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 TUBB4BP68371 445 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 TARDBPQ13148 414 aaKnown RBP eCLIP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 FZD2Q14332 565 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 NXNQ6DKJ4 435 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 NEPROQ6NW34 567 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 IYDQ6PHW0 289 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 KIAA0907Q7Z7F0 614 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 CAND1Q86VP6 1230 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 PARGQ86W56 976 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC13A5Q86YT5 568 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 NIPA2Q8N8Q9 360 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 INPP5DQ92835 1189 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 ZC3H10Q96K80 434 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 CTRCQ99895 268 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 GPATCH1Q9BRR8 931 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 TRIM51Q9BSJ1 452 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 QPCTLQ9NXS2 382 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 REV1Q9UBZ9 1251 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC2A6Q9UGQ3 507 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 AMACRQ9UHK6 382 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 FZD4Q9ULV1 537 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 NFU1Q9UMS0 254 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 LRCH1Q9Y2L9 728 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 CRYL1Q9Y2S2 319 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 PCDHB1Q9Y5F3 818 aa7.75□□□□□ -1.17
LIMCH1-219ENST00000514096 A0A0J9YYE9 177 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 BHMG1C9JSJ3 638 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 RTCAO00442 366 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 MFN2O95140 757 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 GSRP00390 522 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 TRBC1P01850 177 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 CD59P13987 128 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 CA4P22748 312 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 PMLP29590 882 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 CTNNA1P35221 906 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 GRK6P43250 576 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 CTBSQ01459 385 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 PTSQ03393 145 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 LSAMPQ13449 338 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 CUL1Q13616 776 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 TCEAL1Q15170 157 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 ATP13A5Q4VNC0 1218 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 DEPDC1Q5TB30 811 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 BNIPLQ7Z465 357 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 GALNT13Q8IUC8 556 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 CDKL3Q8IVW4 592 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 KATNAL2Q8IYT4 538 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 ARRDC2Q8TBH0 407 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 AKAP1Q92667 903 aaKnown RBP eCLIP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 TEKT5Q96M29 485 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 TLR10Q9BXR5 811 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 CAPN10Q9HC96 672 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 PCYT1BQ9Y5K3 369 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 ATMQ13315 3056 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 NBEAQ8NFP9 2946 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 TRAV6A0A075B6T7 132 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 PRR5-ARHGAP8B1AHC4 643 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 ATP6V1G2-DDX39BF2Z307 99 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 AGPSO00116 658 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 HAT1O14929 419 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 CBFA2T3O75081 653 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 ENTPD5O75356 428 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 HEXIM1O94992 359 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 PRAMEF1O95521 474 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 ZNF8P17098 575 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 AMD1P17707 334 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 ITIH1P19827 911 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 VIPR1P32241 457 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 MMP12P39900 470 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 GRIA4P48058 902 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 HK3P52790 923 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 HSPA14Q0VDF9 509 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 ALG11Q2TAA5 492 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 TRIM16LQ309B1 348 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 HES3Q5TGS1 186 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC23A3Q6PIS1 610 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 RBM44Q6ZP01 1051 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC44A2Q8IWA5 706 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 SYTL1Q8IYJ3 562 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 CCNYL1Q8N7R7 359 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 ZNF548Q8NEK5 533 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 CADM4Q8NFZ8 388 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 OR56A4Q8NGH8 313 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 MCUR1Q96AQ8 359 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 DCUN1D1Q96GG9 259 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 WDR92Q96MX6 357 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 RBM14Q96PK6 669 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 KRT12Q99456 494 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 ACAT2Q9BWD1 397 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 ZNF717Q9BY31 904 aaPredicted RBP7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms