RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 SMAD5Q99717 465 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 NSUN3Q9H649 340 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 SGK2Q9HBY8 427 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 NLE1Q9NVX2 485 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 PCDHB3Q9Y5E6 796 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 CENPXA8MT69 81 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 H0Y858 1186 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 AGRPO00253 132 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 OR10H3O60404 316 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 TSC22D2O75157 780 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 EIF2S1P05198 315 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 GNAO1P09471 354 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 GABRB3P28472 473 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 INHBCP55103 352 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 C6orf141Q5SZD1 244 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 KANK2Q63ZY3 851 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 PDE12Q6L8Q7 609 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 CCDC80Q76M96 950 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 NANOGNBQ7Z5D8 188 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 LUZP2Q86TE4 346 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 CHERPQ8IWX8 916 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 TMEM102Q8N9M5 508 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 TRIM63Q969Q1 353 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 PAAF1Q9BRP4 392 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 CXCL16Q9H2A7 254 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 ANKDD1BA6NHY2 528 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 ASGR1P07306 291 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 CKBP12277 381 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 GPX3P22352 226 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 RPL10P27635 214 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 GRK3P35626 688 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 MAGEA10P43363 369 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 UPP1Q16831 310 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 USP41Q3LFD5 358 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 USP39Q53GS9 565 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 ARHGAP15Q53QZ3 475 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 COQ5Q5HYK3 327 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 OR2T5Q6IEZ7 315 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 ERAP2Q6P179 960 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 MINDY2Q8NBR6 621 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 C11orf65Q8NCR3 313 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 OR2T29Q8NH02 315 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 WDR36Q8NI36 951 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 GAB3Q8WWW8 586 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 PHF21AQ96BD5 680 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 PTERQ96BW5 349 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 ZNF382Q96SR6 550 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 HDHD2Q9H0R4 259 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 SPG21Q9NZD8 308 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 ADAM30Q9UKF2 790 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 ST14Q9Y5Y6 855 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 A0A0U1RQF3 1178 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 MEIS3P2A8K0S8 358 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 ANKRD66B4E2M5 251 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 PLK4O00444 970 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 TFECO14948 347 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 OR1I1O60431 355 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 DFNA5O60443 496 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 TMCC2O75069 709 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 ANXA4P09525 319 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 TALDO1P37837 337 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 AP1S1P61966 158 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 GRIK2Q13002 908 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 GRB14Q14449 540 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 LAPTM4AQ15012 233 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 ZNF57Q68EA5 555 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 LARP4Q71RC2 724 aaKnown RBP eCLIP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 TRAPPC5Q8IUR0 188 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 PHACTR4Q8IZ21 702 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 SLC34A3Q8N130 599 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 IPCEF1Q8WWN9 437 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 KCNN1Q92952 543 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 PYURFQ96I23 114 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 LRCH3Q96II8 777 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 RDH12Q96NR8 316 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 TCF25Q9BQ70 676 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 TNKS2Q9H2K2 1166 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 SDR39U1Q9NRG7 319 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 FAIMQ9NVQ4 179 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 BTAF1O14981 1849 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 CCDC182A6NF36 153 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 FBP2O00757 339 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 PDE9AO76083 593 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 MATN4O95460 622 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 DNAJA1P31689 397 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 CDH12P55289 794 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 FOXA1P55317 472 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 RPS7P62081 194 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 NFATC3Q12968 1075 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 PLEKHG6Q3KR16 790 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 COLEC12Q5KU26 742 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 PIK3R6Q5UE93 754 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 KCTD11Q693B1 232 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 CNTN4Q8IWV2 1026 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 ZZZ3Q8IYH5 903 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 OR10T2Q8NGX3 314 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 PPCDCQ96CD2 204 aa8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 RPL10LQ96L21 214 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-216ENST00000512820 C3orf30Q96M34 536 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms