RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 UNC5BQ8IZJ1 945 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 CBARPQ8N350 705 aaPredicted RBP8.58□□□□□ -1.04
USP4-213ENST00000488520 NOA1Q8NC60 698 aaKnown RBP8.58□□□□□ -1.04
USP4-213ENST00000488520 OR6P1Q8NGX9 317 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 RNF31Q96EP0 1072 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 COQ10AQ96MF6 247 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 SERPINB12Q96P63 405 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 RANBP9Q96S59 729 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 GORASP1Q9BQQ3 440 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 ZSCAN5AQ9BUG6 496 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 FAM129AQ9BZQ8 928 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 ABCG8Q9H221 673 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 CARS2Q9HA77 564 aaKnown RBP8.58□□□□□ -1.04
USP4-213ENST00000488520 CHRAC1Q9NRG0 131 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 OCIAD1Q9NX40 245 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 SLC39A1Q9NY26 324 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 TMEM9Q9P0T7 183 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 CD84Q9UIB8 345 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 ANAPC2Q9UJX6 822 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 SPO11Q9Y5K1 396 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 ARL5AQ9Y689 179 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 CENPEQ02224 2701 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 HIVEP3Q5T1R4 2406 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 ITPR2Q14571 2701 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 PIKFYVEQ9Y2I7 2098 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 TRBV23OR9-2A0A075B6M9 112 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 GLYATL1P3A0A0U1RQE8 302 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 A6NHS1 94 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 EFCAB7A8K855 629 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 A8MU76 341 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 F8W8V4 182 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 TNFRSF10CO14798 259 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 HGSO14964 777 aaPredicted RBP8.57□□□□□ -1.04
USP4-213ENST00000488520 PPM1DO15297 605 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 EIF3HO15372 352 aaKnown RBP eCLIP8.57□□□□□ -1.043e-7■■■■□ 20.2
USP4-213ENST00000488520 RAD1O60671 282 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 SLC25A14O95258 325 aaPredicted RBP8.57□□□□□ -1.04
USP4-213ENST00000488520 TTC4O95801 387 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 FUCA1P04066 466 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 RALBP11234 206 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 GM2AP17900 193 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 NR1D1P20393 614 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 LHCGRP22888 699 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 IVDP26440 423 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 CSTF2P33240 577 aaKnown RBP eCLIP8.57□□□□□ -1.04
USP4-213ENST00000488520 GNPDA1P46926 289 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 LIMK2P53671 638 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 DPTQ07507 201 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 RALGDSQ12967 914 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 PDIA2Q13087 525 aaKnown RBP8.57□□□□□ -1.04
USP4-213ENST00000488520 CUL1Q13616 776 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 GTF2H3Q13889 308 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 KCTD19Q17RG1 926 aaPredicted RBP8.57□□□□□ -1.04
USP4-213ENST00000488520 DEFB109BQ30KR1 87 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 CCDC38Q502W7 563 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 FASTKD1Q53R41 847 aaKnown RBP8.57□□□□□ -1.04
USP4-213ENST00000488520 ZRANB3Q5FWF4 1079 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 SNAP47Q5SQN1 464 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 TSTD2Q5T7W7 516 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 LYPLAL1Q5VWZ2 237 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 ANKRD22Q5VYY1 191 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 ALS2CLQ60I27 953 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 PDPK2PQ6A1A2 396 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 SLC30A9Q6PML9 568 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 TECPR1Q7Z6L1 1165 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 ZNF761Q86XN6 746 aaPredicted RBP8.57□□□□□ -1.04
USP4-213ENST00000488520 NRROSQ86YC3 692 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 TRAM1L1Q8N609 369 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 OTUD6BQ8N6M0 293 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 C9orf43Q8TAL5 461 aaPredicted RBP8.57□□□□□ -1.04
USP4-213ENST00000488520 ZNF398Q8TD17 642 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 GPBAR1Q8TDU6 330 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 PYROXD1Q8WU10 500 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 LRRC39Q96DD0 335 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 STAMBPL1Q96FJ0 436 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 DTD2Q96FN9 168 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 DCUN1D1Q96GG9 259 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 PLEKHG4BQ96PX9 1271 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 SMIM14Q96QK8 99 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 CTRCQ99895 268 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 C19orf43Q9BQ61 176 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 RIOK2Q9BVS4 552 aaKnown RBP8.57□□□□□ -1.04
USP4-213ENST00000488520 ASB8Q9H765 288 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 WDR26Q9H7D7 661 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 LRRC4CQ9HCJ2 640 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 SRA1Q9HD15 236 aaKnown RBP8.57□□□□□ -1.04
USP4-213ENST00000488520 TPSG1Q9NRR2 321 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 PHPT1Q9NRX4 125 aaPredicted RBP8.57□□□□□ -1.04
USP4-213ENST00000488520 NLE1Q9NVX2 485 aaPredicted RBP8.57□□□□□ -1.04
USP4-213ENST00000488520 IL17CQ9P0M4 197 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 TAAR2Q9P1P5 351 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 EGFL7Q9UHF1 273 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 RIMKLBQ9ULI2 386 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 TCAF1Q9Y4C2 921 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 PLEKHM1Q9Y4G2 1056 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 FAM169AQ9Y6X4 670 aa8.57□□□□□ -1.04
USP4-213ENST00000488520 A0A0U1RQS6 177 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 LOC101059948A0A1B0GTJ6 334 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 CCDC78A2IDD5 438 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 ZNF891A8MT65 544 aaPredicted RBP8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms