RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ARHGEF7Q14155 803 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 GCNT7Q6ZNI0 430 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 ZNF548Q8NEK5 533 aaPredicted RBP17.59■□□□□ 0.41
VIM-206ENST00000487938 RNF217Q8TC41 542 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 FAM162AQ96A26 154 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 YTHDF1Q9BYJ9 559 aaKnown RBP17.59■□□□□ 0.41
VIM-206ENST00000487938 TNKS2Q9H2K2 1166 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 LRTM1Q9HBL6 345 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 SLC28A1O00337 649 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 AOC2O75106 756 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 PRKD3O94806 890 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 IL7RP16871 459 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 MSH3P20585 1137 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 ITGALP20701 1170 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 ACRV1P26436 265 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 HOXD10P28358 340 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 BCL2L1Q07817 233 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 GPRC6AQ5T6X5 926 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 CACHD1Q5VU97 1274 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 ZBTB46Q86UZ6 589 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 ZNF420Q8TAQ5 688 aaPredicted RBP17.58■□□□□ 0.4
VIM-206ENST00000487938 ULK4Q96C45 1275 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 ALG14Q96F25 216 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 SLC47A1Q96FL8 570 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 OR52E6Q96RD3 313 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 TSEN34Q9BSV6 310 aaKnown RBP17.58■□□□□ 0.4
VIM-206ENST00000487938 PLGRKTQ9HBL7 147 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 INVSQ9Y283 1065 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 ELOVL7A1L3X0 281 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 K7EPI3 171 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 MANBAO00462 879 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 CXCR6O00574 342 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 TRBC1P01850 177 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 PRKACGP22612 351 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 TTKP33981 857 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 NOGQ13253 232 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 CPSF6Q16630 551 aaKnown RBP eCLIP17.58■□□□□ 0.4
VIM-206ENST00000487938 TBC1D25Q3MII6 688 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 ANKDD1AQ495B1 522 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 SLC44A4Q53GD3 710 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 XKR5Q6UX68 686 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 ZNF783Q6ZMS7 281 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 TSPAN33Q86UF1 283 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 CRIPAKQ8N1N5 446 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 OR10Q1Q8NGQ4 319 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 ZNF461Q8TAF7 563 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 RAET1EQ8TD07 263 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 AURKBQ96GD4 344 aaPredicted RBP17.58■□□□□ 0.4
VIM-206ENST00000487938 DOK1Q99704 481 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 ACTR8Q9H981 624 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 AFF4Q9UHB7 1163 aaKnown RBP17.58■□□□□ 0.4
VIM-206ENST00000487938 CIDEBQ9UHD4 219 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 CDH7Q9ULB5 785 aa17.58■□□□□ 0.4
VIM-206ENST00000487938 GLYATL1P3A0A0U1RQE8 302 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 AREL1O15033 823 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 GSNP06396 782 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 EPB42P16452 691 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 AP1S1P61966 158 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 MYBPC3Q14896 1274 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 RUNDC3AQ59EK9 446 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 LHX8Q68G74 356 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 ZNF773Q6PK81 442 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 THAP5Q7Z6K1 395 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 C10orf111Q8N326 155 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 AADATQ8N5Z0 425 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 ARL14EPQ8N8R7 260 aaPredicted RBP17.57■□□□□ 0.4
VIM-206ENST00000487938 CD99L2Q8TCZ2 262 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 GFM2Q969S9 779 aaKnown RBP17.57■□□□□ 0.4
VIM-206ENST00000487938 SDCCAG3Q96C92 435 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 SCLYQ96I15 445 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 CCDC115Q96NT0 180 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 MRPL9Q9BYD2 267 aaKnown RBP17.57■□□□□ 0.4
VIM-206ENST00000487938 FAM118AQ9NWS6 357 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 DNAJB9Q9UBS3 223 aa17.57■□□□□ 0.4
VIM-206ENST00000487938 TPD52P55327 224 aaPredicted RBP17.56■□□□□ 0.4
VIM-206ENST00000487938 PHC1P78364 1004 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 PIGFQ07326 219 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 MAD2L1Q13257 205 aaPredicted RBP17.56■□□□□ 0.4
VIM-206ENST00000487938 MEP1AQ16819 746 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 FAM117BQ6P1L5 589 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 R3HCC1LQ7Z5L2 792 aaKnown RBP17.56■□□□□ 0.4
VIM-206ENST00000487938 ADAMTS19Q8TE59 1207 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 NCLNQ969V3 563 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 AMBRA1Q9C0C7 1298 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 PAIP1Q9H074 479 aaKnown RBP17.56■□□□□ 0.4
VIM-206ENST00000487938 CLMPQ9H6B4 373 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 CLEC4EQ9ULY5 219 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 YIPF1Q9Y548 306 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 PCDHB14Q9Y5E9 798 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 PCDHGA8Q9Y5G5 932 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 B3GALT4O96024 378 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 IL6P05231 212 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 PIGAP37287 484 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 NEK2P51955 445 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 BNIP3Q12983 259 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 CDKN3Q16667 212 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 TXNDC8Q6A555 127 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 SPESP1Q6UW49 350 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 TRIM46Q7Z4K8 759 aa17.56■□□□□ 0.4
VIM-206ENST00000487938 DNAJB7Q7Z6W7 309 aaPredicted RBP17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms