RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 HAT1O14929 419 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 PDE9AO76083 593 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 DNTTP04053 509 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 FGF1P05230 155 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 FABP3P05413 133 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 ENPEPQ07075 957 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 COX10Q12887 443 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 ATAD3BQ5T9A4 648 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 FAM171A1Q5VUB5 890 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 PLEKHH3Q7Z736 793 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 CARM1Q86X55 608 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 VANGL1Q8TAA9 524 aaPredicted RBP13.29□□□□□ -0.28
USP42-206ENST00000479544 ATL1Q8WXF7 558 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 HDAC2Q92769 488 aaKnown RBP13.29□□□□□ -0.28
USP42-206ENST00000479544 ABHD16BQ9H3Z7 469 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 SERHL2Q9H4I8 314 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 SIAEQ9HAT2 523 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 SERHLQ9NQF3 203 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 SAMD4AQ9UPU9 718 aaKnown RBP13.29□□□□□ -0.28
USP42-206ENST00000479544 LCKP06239 509 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 AKR1D1P51857 326 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 CDKN2DP55273 166 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 CD300CQ08708 224 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 GTF2H2Q13888 395 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 C6orf136Q5SQH8 315 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.29□□□□□ -0.28
USP42-206ENST00000479544 GTF2H2CQ6P1K8 395 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 DENND1CQ8IV53 801 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 GHDCQ8N2G8 530 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 NCSTNQ92542 709 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 PAWRQ96IZ0 340 aaKnown RBP13.29□□□□□ -0.28
USP42-206ENST00000479544 LTB4R2Q9NPC1 389 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 C11orf16Q9NQ32 467 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 GMIPQ9P107 970 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 CPQQ9Y646 472 aa13.29□□□□□ -0.28
USP42-206ENST00000479544 NINQ8N4C6 2090 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 TREHO43280 583 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 SMIM10L2AP0DMW4 78 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 SMIM10L2BP0DMW5 78 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 ATF4P18848 351 aaPredicted RBP13.28□□□□□ -0.28
USP42-206ENST00000479544 GRK4P32298 578 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 CD68P34810 354 aaPredicted RBP13.28□□□□□ -0.28
USP42-206ENST00000479544 LRP8Q14114 963 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 PAFAH1B3Q15102 231 aaKnown RBP13.28□□□□□ -0.28
USP42-206ENST00000479544 ZNF544Q6NX49 715 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 ADGRG5Q8IZF4 528 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 EEF1AKMT1Q8WVE0 214 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 SH3YL1Q96HL8 342 aaPredicted RBP13.28□□□□□ -0.28
USP42-206ENST00000479544 MYRFLQ96LU7 910 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 PARK7Q99497 189 aaKnown RBP13.28□□□□□ -0.28
USP42-206ENST00000479544 TCF25Q9BQ70 676 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 SSR3Q9UNL2 185 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 ANKDD1BA6NHY2 528 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 ACOT8O14734 319 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 PRMT5O14744 637 aaPredicted RBP13.28□□□□□ -0.28
USP42-206ENST00000479544 C9P02748 559 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 GANABQ14697 944 aaKnown RBP13.28□□□□□ -0.28
USP42-206ENST00000479544 BORAQ6PGQ7 559 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 FAM217AQ8IXS0 508 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 ACAT2Q9BWD1 397 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 YTHDF1Q9BYJ9 559 aaKnown RBP13.28□□□□□ -0.28
USP42-206ENST00000479544 TP63Q9H3D4 680 aaPredicted RBP13.28□□□□□ -0.28
USP42-206ENST00000479544 FAM118AQ9NWS6 357 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 PPP2R3BQ9Y5P8 575 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 MYH14Q7Z406 1995 aaKnown RBP13.28□□□□□ -0.28
USP42-206ENST00000479544 CASKO14936 926 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 SCELO95171 688 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 GLUD1P00367 558 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 VIPP01282 170 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 RPLP0P05388 317 aaKnown RBP13.28□□□□□ -0.28
USP42-206ENST00000479544 C8BP07358 591 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 DGKAP23743 735 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 PSMA1P25786 263 aaKnown RBP13.28□□□□□ -0.28
USP42-206ENST00000479544 PRDX3P30048 256 aaKnown RBP13.28□□□□□ -0.28
USP42-206ENST00000479544 CPT1AP50416 773 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 CSNK2BP67870 215 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 INCA1Q0VD86 236 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 MFSD10Q14728 455 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 ATP6AP1Q15904 470 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 TXNDC11Q6PKC3 985 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 CILP2Q8IUL8 1156 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 ZNF614Q8N883 585 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 BTN2A2Q8WVV5 523 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 RTP4Q96DX8 246 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 RANBP9Q96S59 729 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 MTERF1Q99551 399 aaKnown RBP13.28□□□□□ -0.28
USP42-206ENST00000479544 SLC30A3Q99726 388 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 ZNF224Q9NZL3 707 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 PCDHGA4Q9Y5G9 962 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 CORINQ9Y5Q5 1042 aa13.28□□□□□ -0.28
USP42-206ENST00000479544 PRRG1O14668 218 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 FPGTO14772 594 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 GTDC1Q4AE62 458 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 SIRPB2Q5JXA9 342 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 ZNF648Q5T619 568 aaPredicted RBP13.27□□□□□ -0.28
USP42-206ENST00000479544 CXCL17Q6UXB2 119 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 DEF8Q6ZN54 512 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 OR52B6Q8NGF0 335 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 SGCDQ92629 289 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 TP53INP1Q96A56 240 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms