RNA–Protein interactions for RNA: ENST00000478531.5

BRCA1-215, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-215ENST00000478531 OR4E2Q8NGC2 313 aa6.71□□□□□ -1.33
BRCA1-215ENST00000478531 OR4D9Q8NGE8 314 aa6.71□□□□□ -1.33
BRCA1-215ENST00000478531 OR52E1Q8NGJ3 308 aa6.71□□□□□ -1.33
BRCA1-215ENST00000478531 LCN9Q8WX39 176 aa6.71□□□□□ -1.33
BRCA1-215ENST00000478531 SEC14L1Q92503 715 aa6.71□□□□□ -1.33
BRCA1-215ENST00000478531 LIN37Q96GY3 246 aaPredicted RBP6.71□□□□□ -1.33
BRCA1-215ENST00000478531 CNTNAP3BQ96NU0 1288 aa6.71□□□□□ -1.33
BRCA1-215ENST00000478531 GPR21Q99679 349 aa6.71□□□□□ -1.33
BRCA1-215ENST00000478531 SLC30A3Q99726 388 aa6.71□□□□□ -1.33
BRCA1-215ENST00000478531 CNTNAP3Q9BZ76 1288 aa6.71□□□□□ -1.33
BRCA1-215ENST00000478531 TRIT1Q9H3H1 467 aaKnown RBP6.71□□□□□ -1.33
BRCA1-215ENST00000478531 SRMSQ9H3Y6 488 aa6.71□□□□□ -1.33
BRCA1-215ENST00000478531 EPB41L1Q9H4G0 881 aa6.71□□□□□ -1.33
BRCA1-215ENST00000478531 XKR8Q9H6D3 395 aa6.71□□□□□ -1.33
BRCA1-215ENST00000478531 ZDHHC18Q9NUE0 388 aa6.71□□□□□ -1.33
BRCA1-215ENST00000478531 PISDQ9UG56 409 aa6.71□□□□□ -1.33
BRCA1-215ENST00000478531 MTRF1LQ9UGC7 380 aaKnown RBP6.71□□□□□ -1.33
BRCA1-215ENST00000478531 LOXL2Q9Y4K0 774 aa6.71□□□□□ -1.33
BRCA1-215ENST00000478531 PSAT1Q9Y617 370 aa6.71□□□□□ -1.33
BRCA1-215ENST00000478531 ATMQ13315 3056 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 URB1O60287 2271 aaKnown RBP6.71□□□□□ -1.34
BRCA1-215ENST00000478531 A0A1W2PNU3 283 aaPredicted RBP6.71□□□□□ -1.34
BRCA1-215ENST00000478531 GSAPA4D1B5 854 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 KRT87PA6NCN2 255 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 ESPNB1AK53 854 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 TMX2-CTNND1H3BSU7 103 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 CAPN5O15484 640 aaPredicted RBP6.71□□□□□ -1.34
BRCA1-215ENST00000478531 BRINP1O60477 761 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 VPS26AO75436 327 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 GPC4O75487 556 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 SLCO2B1O94956 709 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 AHSGP02765 367 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 JMJD7P0C870 316 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 POLR2CP19387 275 aaPredicted RBP6.71□□□□□ -1.34
BRCA1-215ENST00000478531 ITIH1P19827 911 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 SAT1P21673 171 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 ACADLP28330 430 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 GABRB3P28472 473 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 CCKBRP32239 447 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 CLCN7P51798 805 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 ZFP36L1Q07352 338 aaKnown RBP6.71□□□□□ -1.34
BRCA1-215ENST00000478531 MGAT5Q09328 741 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 C16orf72Q14CZ0 275 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 PLEKHS1Q5SXH7 462 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 TEX35Q5T0J7 233 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 ARMC6Q6NXE6 501 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 TMEM71Q6P5X7 295 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 KLHL35Q6PF15 583 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 KIAA0408Q6ZU52 694 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 RAB11FIP2Q7L804 512 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 STRA8Q7Z7C7 330 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 OOSP2Q86WS3 158 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 FAM129CQ86XR2 697 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 PLXDC1Q8IUK5 500 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 FBXO39Q8N4B4 442 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 OR5K2Q8NHB8 316 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 GIMAP7Q8NHV1 300 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 WDR36Q8NI36 951 aaKnown RBP6.71□□□□□ -1.34
BRCA1-215ENST00000478531 ZCCHC14Q8WYQ9 949 aaKnown RBP6.71□□□□□ -1.34
BRCA1-215ENST00000478531 KCNJ9Q92806 393 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 FMO2Q99518 471 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 DPYSL5Q9BPU6 564 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 AARSD1Q9BTE6 412 aaKnown RBP6.71□□□□□ -1.34
BRCA1-215ENST00000478531 MFRPQ9BY79 579 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 MVB12BQ9H7P6 319 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 POLR1BQ9H9Y6 1135 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 HRASLS2Q9NWW9 162 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 AKAP7Q9P0M2 348 aaPredicted RBP6.71□□□□□ -1.34
BRCA1-215ENST00000478531 TRMT6Q9UJA5 497 aaKnown RBP6.71□□□□□ -1.34
BRCA1-215ENST00000478531 NFS1Q9Y697 457 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 PCM1Q15154 2024 aa6.71□□□□□ -1.34
BRCA1-215ENST00000478531 KMT2BQ9UMN6 2715 aaPredicted RBP6.71□□□□□ -1.34
BRCA1-215ENST00000478531 SPTBP11277 2137 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 MN1Q10571 1320 aaPredicted RBP6.7□□□□□ -1.34
BRCA1-215ENST00000478531 ZFYVE26Q68DK2 2539 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 SDK2Q58EX2 2172 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 TCRBV9S1A1TA0A576 114 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 OR5K3A6NET4 321 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 PLD2O14939 933 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 KIF1CO43896 1103 aaKnown RBP6.7□□□□□ -1.34
BRCA1-215ENST00000478531 RPN2P04844 631 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 MCM3P25205 808 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 CSTF2P33240 577 aaKnown RBP eCLIP6.7□□□□□ -1.34
BRCA1-215ENST00000478531 SEPHS1P49903 392 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 PGGT1BP53609 377 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 MAPK10P53779 464 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 CDKN2DP55273 166 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 GPX6P59796 221 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 PRKAA1Q13131 559 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 FRG1Q14331 258 aaKnown RBP6.7□□□□□ -1.34
BRCA1-215ENST00000478531 CLPPQ16740 277 aaPredicted RBP6.7□□□□□ -1.34
BRCA1-215ENST00000478531 KLHL38Q2WGJ6 581 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 TTLL9Q3SXZ7 439 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 ACSBG2Q5FVE4 666 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 C3orf62Q6ZUJ4 267 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 TAX1BP1Q86VP1 789 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 CTAGE3PQ8IX95 158 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 CPNE9Q8IYJ1 553 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 TBC1D21Q8IYX1 336 aa6.7□□□□□ -1.34
BRCA1-215ENST00000478531 CACTIN-AS1Q8N1I8 211 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms