RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 DOCK8Q8NF50 2099 aa4.9□□□□□ -1.62
CCDC39-204ENST00000476379 GLOD5A6NK44 160 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 SMAD9O15198 467 aaKnown RBP4.9□□□□□ -1.63
CCDC39-204ENST00000476379 LATO43561 262 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 ERAL1O75616 437 aaKnown RBP4.9□□□□□ -1.63
CCDC39-204ENST00000476379 CSF2P04141 144 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 CDK4P11802 303 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 PKMP14618 531 aaKnown RBP4.9□□□□□ -1.63
CCDC39-204ENST00000476379 CDH3P22223 829 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 S100A5P33763 92 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 ATP5C1P36542 298 aaKnown RBP4.9□□□□□ -1.63
CCDC39-204ENST00000476379 FEN1P39748 380 aaKnown RBP4.9□□□□□ -1.63
CCDC39-204ENST00000476379 PREPP48147 710 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 CLCN5P51795 746 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 KYAT1Q16773 422 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 RGS21Q2M5E4 152 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 USP41Q3LFD5 358 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 AASDHQ4L235 1098 aaPredicted RBP4.9□□□□□ -1.63
CCDC39-204ENST00000476379 RFTN2Q52LD8 501 aaPredicted RBP4.9□□□□□ -1.63
CCDC39-204ENST00000476379 XKR6Q5GH73 641 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 MS4A13Q5J8X5 152 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 NANOGP8Q6NSW7 305 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 C4orf22Q6V702 233 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 SYVN1Q86TM6 617 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 TMEM135Q86UB9 458 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 SERPINA9Q86WD7 417 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 ADGRG2Q8IZP9 1017 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 EID3Q8N140 333 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.9□□□□□ -1.63
CCDC39-204ENST00000476379 RTL3Q8N8U3 475 aaKnown RBP4.9□□□□□ -1.63
CCDC39-204ENST00000476379 ASB9Q96DX5 294 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 MTERF3Q96E29 417 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 GPATCH1Q9BRR8 931 aaKnown RBP4.9□□□□□ -1.63
CCDC39-204ENST00000476379 TRIM54Q9BYV2 358 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 NANOGQ9H9S0 305 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 SSU72Q9NP77 194 aaKnown RBP4.9□□□□□ -1.63
CCDC39-204ENST00000476379 PAK6Q9NQU5 681 aaPredicted RBP4.9□□□□□ -1.63
CCDC39-204ENST00000476379 PRDM6Q9NQX0 595 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 HCFC1R1Q9NWW0 138 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 CMTM6Q9NX76 183 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 SCN3BQ9NY72 215 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 DUSP12Q9UNI6 340 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 SLC22A14Q9Y267 594 aa4.9□□□□□ -1.63
CCDC39-204ENST00000476379 A0A087X1B8 175 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 C2orf78A6NCI8 922 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 LOC730098B7Z3J9 87 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 TAF4O00268 1085 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 PIRO00625 290 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 ANGPTL1O95841 491 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 MLNP12872 115 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 TNNI3P19429 210 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 ITGALP20701 1170 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 HOXC13P31276 330 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 GPC1P35052 558 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 BLVRAP53004 296 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 CRYBB1P53674 252 aaPredicted RBP4.89□□□□□ -1.63
CCDC39-204ENST00000476379 NUP107P57740 925 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 RHDQ02161 417 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 NAE1Q13564 534 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 INAQ16352 499 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 ZC3H12BQ5HYM0 836 aaKnown RBP4.89□□□□□ -1.63
CCDC39-204ENST00000476379 RTP2Q5QGT7 225 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 UBXN11Q5T124 520 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 TNFAIP8L2Q6P589 184 aaPredicted RBP4.89□□□□□ -1.63
CCDC39-204ENST00000476379 TBPL2Q6SJ96 375 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 TMEM207Q6UWW9 146 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 RSPO2Q6UXX9 243 aaPredicted RBP4.89□□□□□ -1.63
CCDC39-204ENST00000476379 DEF8Q6ZN54 512 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 TMPRSS11BQ86T26 416 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 TSPAN33Q86UF1 283 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 UXS1Q8NBZ7 420 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 CYB5D2Q8WUJ1 264 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 JPH3Q8WXH2 748 aaPredicted RBP4.89□□□□□ -1.63
CCDC39-204ENST00000476379 TAMM41Q96BW9 452 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 CCDC126Q96EE4 140 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 VAT1Q99536 393 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 BARD1Q99728 777 aaKnown RBP4.89□□□□□ -1.63
CCDC39-204ENST00000476379 ADGRE3Q9BY15 652 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 TUBB1Q9H4B7 451 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 MRPL40Q9NQ50 206 aaKnown RBP4.89□□□□□ -1.63
CCDC39-204ENST00000476379 TRPM5Q9NZQ8 1165 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 COQ6Q9Y2Z9 468 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 A0A1B0GVC2 190 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 ANKDD1BA6NHY2 528 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 A6NIN4 97 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 C5orf58C9J3I9 102 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 BHMG1C9JSJ3 638 aaPredicted RBP4.89□□□□□ -1.63
CCDC39-204ENST00000476379 KLF11O14901 512 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 LIN7AO14910 233 aaPredicted RBP4.89□□□□□ -1.63
CCDC39-204ENST00000476379 BCAS2O75934 225 aaPredicted RBP4.89□□□□□ -1.63
CCDC39-204ENST00000476379 SNX4O95219 450 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 KRT8P05787 483 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 THRBP10828 461 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 PEPDP12955 493 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 CDH2P19022 906 aaPredicted RBP4.89□□□□□ -1.63
CCDC39-204ENST00000476379 TACR2P21452 398 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 PROZP22891 400 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 SERPINB10P48595 397 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 SLC11A1P49279 550 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 BCL2L1Q07817 233 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms