RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 DHCR7Q9UBM7 475 aaKnown RBP7.71□□□□□ -1.18
USP54-211ENST00000474929 SLC23A2Q9UGH3 650 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 SLC24A2Q9UI40 661 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 ASB1Q9Y576 335 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 FHOD1Q9Y613 1164 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 CCDC88CQ9P219 2028 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 TGP01266 2768 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 ARID1AO14497 2285 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 SERINC4A6NH21 518 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 C2orf74A8MZ97 194 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 PVRP15151 417 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 CTPS1P17812 591 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 POLR2CP19387 275 aaPredicted RBP7.7□□□□□ -1.18
USP54-211ENST00000474929 MX2P20592 715 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 THBS2P35442 1172 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 SPINT3P49223 89 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 PAPOLAP51003 745 aaKnown RBP7.7□□□□□ -1.18
USP54-211ENST00000474929 TPI1P60174 286 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 RPL26P61254 145 aaKnown RBP7.7□□□□□ -1.18
USP54-211ENST00000474929 LRRC63Q05C16 580 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 ZNF33BQ06732 778 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 GALNT3Q14435 633 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 KRTAP24-1Q3LI83 254 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 TFDP3Q5H9I0 405 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 ARHGAP11AQ6P4F7 1023 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 RFLNAQ6ZTI6 216 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 C11orf96Q7Z7L8 435 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 AMZ2Q86W34 360 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 GRAMD1CQ8IYS0 662 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 MARVELD2Q8N4S9 558 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 C19orf47Q8N9M1 422 aaKnown RBP7.7□□□□□ -1.18
USP54-211ENST00000474929 BRSK1Q8TDC3 778 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 PIH1D2Q8WWB5 315 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 CCDC34Q96HJ3 373 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 ZNF396Q96N95 335 aaPredicted RBP7.7□□□□□ -1.18
USP54-211ENST00000474929 TTC25Q96NG3 672 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 LYSMD1Q96S90 227 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 KCTD15Q96SI1 283 aaPredicted RBP7.7□□□□□ -1.18
USP54-211ENST00000474929 SPATA16Q9BXB7 569 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 TSPAN10Q9H1Z9 355 aaPredicted RBP7.7□□□□□ -1.18
USP54-211ENST00000474929 UBE2TQ9NPD8 197 aaPredicted RBP7.7□□□□□ -1.18
USP54-211ENST00000474929 NFKBIL1Q9UBC1 381 aaPredicted RBP7.7□□□□□ -1.18
USP54-211ENST00000474929 ADGRE2Q9UHX3 823 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 TMEM59LQ9UK28 342 aa7.7□□□□□ -1.18
USP54-211ENST00000474929 RPL26L1Q9UNX3 145 aaKnown RBP7.7□□□□□ -1.18
USP54-211ENST00000474929 PHF3Q92576 2039 aaKnown RBP7.69□□□□□ -1.18
USP54-211ENST00000474929 C1orf232A0A0U1RR37 186 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 FIGNL2A6NMB9 653 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 H3BMH7 237 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 PRMT3O60678 531 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 LSM8O95777 96 aaKnown RBP7.69□□□□□ -1.18
USP54-211ENST00000474929 F10P00742 488 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 SLC35G4P0C7Q5 338 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 IL4RP24394 825 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 PRDX3P30048 256 aaKnown RBP7.69□□□□□ -1.18
USP54-211ENST00000474929 CDH5P33151 784 aaPredicted RBP7.69□□□□□ -1.18
USP54-211ENST00000474929 USP8P40818 1118 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 DLX5P56178 289 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 BPIFB4P59827 614 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 FANCCQ00597 558 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 OCA2Q04671 838 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 KRT33BQ14525 404 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 C8orf34Q49A92 452 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 ATP13A4Q4VNC1 1196 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 PDLIM3Q53GG5 364 aaPredicted RBP7.69□□□□□ -1.18
USP54-211ENST00000474929 ANKRD20A8PQ5CZ79 823 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 GPRC6AQ5T6X5 926 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 TXNRD3NBQ6F5E7 133 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 NEK10Q6ZWH5 1172 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 CCDC71Q8IV32 467 aaPredicted RBP7.69□□□□□ -1.18
USP54-211ENST00000474929 MCATQ8IVS2 390 aaKnown RBP7.69□□□□□ -1.18
USP54-211ENST00000474929 FAM20CQ8IXL6 584 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 ULK2Q8IYT8 1036 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 TRAM1L1Q8N609 369 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 CCDC185Q8N715 623 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 ZNF655Q8N720 491 aaPredicted RBP7.69□□□□□ -1.18
USP54-211ENST00000474929 EHBP1Q8NDI1 1231 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 ACVR1CQ8NER5 493 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 OR5M3Q8NGP4 307 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 SLC20A1Q8WUM9 679 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 ROBO4Q8WZ75 1007 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 SCMH1Q96GD3 660 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 ZNF354BQ96LW1 612 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 SIGLEC12Q96PQ1 595 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 OLFM1Q99784 485 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 PLA2G12AQ9BZM1 189 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 SRMSQ9H3Y6 488 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 SOX17Q9H6I2 414 aaPredicted RBP7.69□□□□□ -1.18
USP54-211ENST00000474929 NOD2Q9HC29 1040 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 TRIM10Q9UDY6 481 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 CDC42EP3Q9UKI2 254 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 WDR37Q9Y2I8 494 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 DNMT3AQ9Y6K1 912 aaPredicted RBP7.69□□□□□ -1.18
USP54-211ENST00000474929 MGAM2Q2M2H8 2515 aa7.69□□□□□ -1.18
USP54-211ENST00000474929 TRIM64A6NGJ6 449 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 TRIM64BA6NI03 449 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 GOLGA8SH3BPF8 625 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 TFECO14948 347 aaPredicted RBP7.68□□□□□ -1.18
USP54-211ENST00000474929 DDX3YO15523 660 aaKnown RBP7.68□□□□□ -1.18
USP54-211ENST00000474929 FZD6O60353 706 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms