RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ARSEP51690 589 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 PGDP52209 483 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 NANOS2P60321 138 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 GCNT1Q02742 428 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 CFHR1Q03591 330 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 GFPT1Q06210 699 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 ZNF177Q13360 481 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 IL11RAQ14626 422 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 SNCBQ16143 134 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 SGCBQ16585 318 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 SLC9C1Q4G0N8 1177 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 EFHC1Q5JVL4 640 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 NDUFAF5Q5TEU4 345 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 JADE1Q6IE81 842 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 SARM1Q6SZW1 724 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 SASS6Q6UVJ0 657 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 ADCK2Q7Z695 626 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 BIVMQ86UB2 503 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 PYROXD2Q8N2H3 581 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 MINDY1Q8N5J2 469 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 ARFGAP1Q8N6T3 406 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 ENDOVQ8N8Q3 282 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 CMASQ8NFW8 434 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 LRRC8CQ8TDW0 803 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 PIBF1Q8WXW3 757 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 KAT2AQ92830 837 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 AZIN2Q96A70 460 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 HDAC11Q96DB2 347 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 EEF2KMTQ96G04 330 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 C5orf30Q96GV9 206 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 PRR11Q96HE9 360 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 TSG101Q99816 390 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 FRMD8P1Q9BZ68 369 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 RTN4RQ9BZR6 473 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 ZNF350Q9GZX5 532 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 FAM234AQ9H0X4 552 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 USP29Q9HBJ7 922 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 HEYLQ9NQ87 328 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 XPNPEP3Q9NQH7 507 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 DNAJC11Q9NVH1 559 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 ARL8BQ9NVJ2 186 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 SLC39A1Q9NY26 324 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 WSB2Q9NYS7 404 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 KCND2Q9NZV8 630 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 TRPC4Q9UBN4 977 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 DNAJB11Q9UBS4 358 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 HMGXB4Q9UGU5 601 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 DDX19BQ9UMR2 479 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 ERVK-19Q9WJR5 959 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 PLEKHA6Q9Y2H5 1048 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 TIMM22Q9Y584 194 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 PCDHA10Q9Y5I2 948 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 COPG1Q9Y678 874 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 A0A1W2PPW3 197 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 HTR3EA5X5Y0 456 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 CDRT15L2A8MXV6 281 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 BTBD18B2RXH4 712 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 KCNJ18B7U540 433 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 SPECC1L-ADORA2AF8WAN1 911 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 PYCARD-AS1I3L0S3 204 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 AGPSO00116 658 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 GRM8O00222 908 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 NDUFAB1O14561 156 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 EIF3DO15371 548 aaKnown RBP eCLIP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 TEX28O15482 410 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 LRRTM2O43300 516 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 ECI2O75521 394 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 SLCO2B1O94956 709 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 CYP21A2P08686 494 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 SERPINF2P08697 491 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 UQCRFS1P1P0C7P4 283 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 POU2F1P14859 743 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 DDX5P17844 614 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 MYF6P23409 242 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 THBS4P35443 961 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 ARL1P40616 181 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 POU3F4P49335 361 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 PRMT2P55345 433 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 KRTAP10-6P60371 365 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 RPS8P62241 208 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 TIAL1Q01085 375 aaKnown RBP eCLIP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 CFHR3Q02985 330 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 KDSRQ06136 332 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 TMEM115Q12893 351 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 PPIL2Q13356 520 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 TSTA3Q13630 321 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 KCNJ12Q14500 433 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 RRS1Q15050 365 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 NADK2Q4G0N4 442 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 NKAIN1Q4KMZ8 207 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 GPAT3Q53EU6 434 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 HSP90AA4PQ58FG1 418 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 IGSF11Q5DX21 431 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 ZNF484Q5JVG2 852 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 ZNF772Q68DY9 489 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 NCCRP1Q6ZVX7 275 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 TRAPPC11Q7Z392 1133 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 ZNF573Q86YE8 665 aa4.75□□□□□ -1.65
CCDC88A-210ENST00000468534 RHPN2Q8IUC4 686 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms