RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 TSSK1BQ9BXA7 367 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-205ENST00000465238 FAM117AQ9C073 453 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 L2HGDHQ9H9P8 463 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 SAYSD1Q9NPB0 183 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 OCIAD1Q9NX40 245 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 DMGDHQ9UI17 866 aaKnown RBP17.31■□□□□ 0.36
COL7A1-205ENST00000465238 ACSL5Q9ULC5 683 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 VPS9D1Q9Y2B5 631 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 KIR2DS5A0A0G2JLQ3 304 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 A0A0G2JNG1 304 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 A6NCN8 305 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 PRR19A6NJB7 356 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 EFCAB7A8K855 629 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 KIR2DS3K7RE56 304 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 EPHA4P54764 986 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 NFATC3Q12968 1075 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 KIR2DS5Q14953 304 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 TBR1Q16650 682 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 TYSND1Q2T9J0 566 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 HSP90AA5PQ58FG0 334 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 AGAP9Q5VTM2 703 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 METRNLQ641Q3 311 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 PTRHD1Q6GMV3 140 aaKnown RBP17.3■□□□□ 0.36
COL7A1-205ENST00000465238 ABRAXAS1Q6UWZ7 409 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 ZDHHC24Q6UX98 284 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 WASH2PQ6VEQ5 465 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 FAM83HQ6ZRV2 1179 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-205ENST00000465238 CCDC25Q86WR0 208 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 CILP2Q8IUL8 1156 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 IL22RA1Q8N6P7 574 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 EPB41L1Q9H4G0 881 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 PPANQ9NQ55 473 aaKnown RBP17.3■□□□□ 0.36
COL7A1-205ENST00000465238 WASH6PQ9NQA3 447 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 IARS2Q9NSE4 1012 aaKnown RBP17.3■□□□□ 0.36
COL7A1-205ENST00000465238 STARD5Q9NSY2 213 aa17.3■□□□□ 0.36
COL7A1-205ENST00000465238 INTS10Q9NVR2 710 aaKnown RBP17.3■□□□□ 0.36
COL7A1-205ENST00000465238 HEMK1Q9Y5R4 338 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-205ENST00000465238 FAM87AP0C7U9 286 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 ERVK-10P10266 1014 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 EIF3BP55884 814 aaKnown RBP17.29■□□□□ 0.36
COL7A1-205ENST00000465238 CYP4F2P78329 520 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 CTBP1Q13363 440 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 FASTKD3Q14CZ7 662 aaKnown RBP17.29■□□□□ 0.36
COL7A1-205ENST00000465238 STEAP4Q687X5 459 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 ARHGAP22Q7Z5H3 698 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 TRIM48Q8IWZ4 208 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 PALM2Q8IXS6 379 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 UNC5BQ8IZJ1 945 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 CACNA2D3Q8IZS8 1091 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 BMPERQ8N8U9 685 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 IFT81Q8WYA0 676 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 NCSTNQ92542 709 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 ELMO1Q92556 727 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 CERS2Q96G23 380 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 WDR83Q9BRX9 315 aaKnown RBP17.29■□□□□ 0.36
COL7A1-205ENST00000465238 SLC12A9Q9BXP2 914 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 FAM129AQ9BZQ8 928 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 GNPTGQ9UJJ9 305 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 PSMD13Q9UNM6 376 aa17.29■□□□□ 0.36
COL7A1-205ENST00000465238 S1PR4O95977 384 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 VIPP01282 170 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 SLC35G4P0C7Q5 338 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 ITGB6P18564 788 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 XRCC1P18887 633 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-205ENST00000465238 RPS3P23396 243 aaKnown RBP eCLIP17.28■□□□□ 0.36
COL7A1-205ENST00000465238 FMO4P31512 558 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 CARSP49589 748 aaKnown RBP17.28■□□□□ 0.36
COL7A1-205ENST00000465238 MC2RQ01718 297 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 SNAP47Q5SQN1 464 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 ANKS6Q68DC2 871 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 PRICKLE2Q7Z3G6 844 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 DENND6AQ8IWF6 608 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 LPGAT1Q92604 370 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 CXorf40BQ96DE9 158 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 PANX3Q96QZ0 392 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 ZPBPQ9BS86 351 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 PHACTR1Q9C0D0 580 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 WWP1Q9H0M0 922 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 P2RY12Q9H244 342 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 COG4Q9H9E3 785 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 SCHIP1Q9P0W5 487 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-205ENST00000465238 CPNE7Q9UBL6 633 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 MTRF1LQ9UGC7 380 aaKnown RBP17.28■□□□□ 0.36
COL7A1-205ENST00000465238 FBXO5Q9UKT4 447 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 CRYL1Q9Y2S2 319 aa17.28■□□□□ 0.36
COL7A1-205ENST00000465238 LILRA5A6NI73 299 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 A8MU76 341 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 BHMG1C9JSJ3 638 aaPredicted RBP17.27■□□□□ 0.36
COL7A1-205ENST00000465238 H3BMM5 538 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 LIN7AO14910 233 aaPredicted RBP17.27■□□□□ 0.36
COL7A1-205ENST00000465238 CAPN5O15484 640 aaPredicted RBP17.27■□□□□ 0.36
COL7A1-205ENST00000465238 RAD1O60671 282 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 ESR1P03372 595 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 RHOXF2BP0C7M4 288 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 LIFP15018 202 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 BRAFP15056 766 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 SLC1A2P43004 574 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 RPA4Q13156 261 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 FRG1Q14331 258 aaKnown RBP17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms