RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 TPRKBQ9Y3C4 175 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 PDZK1P1A8MUH7 402 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 STX16O14662 325 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 HPCAL1P37235 193 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 CAPGP40121 348 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 EEFSECP57772 596 aaKnown RBP11.41□□□□□ -0.58
NPHP4-204ENST00000460696 EPS8Q12929 822 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 OR9Q1Q8NGQ5 310 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 AP2M1Q96CW1 435 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 AURKBQ96GD4 344 aaPredicted RBP11.41□□□□□ -0.58
NPHP4-204ENST00000460696 PTTG2Q9NZH5 202 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 ZIM2Q9NZV7 527 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 DHRS7Q9Y394 339 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 hCG_2039718K7EN88 272 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 PRKD3O94806 890 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 ATXN1LP0C7T5 689 aaKnown RBP11.41□□□□□ -0.58
NPHP4-204ENST00000460696 PBX2P40425 430 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 MAPK11Q15759 364 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 LRRC66Q68CR7 880 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 CHST9Q7L1S5 443 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 HOMEZQ8IX15 550 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 PHACTR4Q8IZ21 702 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 KREMEN2Q8NCW0 462 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 MDGA1Q8NFP4 955 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 SLC29A1Q99808 456 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 OGDHLQ9ULD0 1010 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 LOC285095A0A1B0GVY8 99 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 IFRD1O00458 451 aaPredicted RBP11.4□□□□□ -0.58
NPHP4-204ENST00000460696 S100A5P33763 92 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 INPP1P49441 399 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 SEMA3AQ14563 771 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 DSC3Q14574 896 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 OR52E8Q6IFG1 317 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 SERPINA13PQ6UXR4 307 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 NUDT18Q6ZVK8 323 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 THAP5Q7Z6K1 395 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 RTN4RL1Q86UN2 441 aaPredicted RBP11.4□□□□□ -0.58
NPHP4-204ENST00000460696 SCML4Q8N228 414 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 STX19Q8N4C7 294 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 DCAF4L2Q8NA75 395 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 ZNF540Q8NDQ6 660 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 TMEM175Q9BSA9 504 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 MUC13Q9H3R2 512 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 POPDC3Q9HBV1 291 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 TMCC3Q9ULS5 477 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 NDRG2Q9UN36 371 aaKnown RBP11.4□□□□□ -0.58
NPHP4-204ENST00000460696 ASF1AQ9Y294 204 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 AP3M1Q9Y2T2 418 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 TRIM43BA6NCK2 446 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 WASH4PA8MWX3 477 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 FPGTO14772 594 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 SERPINA1P01009 418 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 CNTN1Q12860 1018 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 GK3PQ14409 553 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 GPR33Q49SQ1 333 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 CMPK2Q5EBM0 449 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 FGD3Q5JSP0 725 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 NADSYN1Q6IA69 706 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 KCTD8Q6ZWB6 473 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 BBS7Q8IWZ6 715 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 APCDD1Q8J025 514 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 TERB1Q8NA31 727 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 TRIM43Q96BQ3 446 aaPredicted RBP11.4□□□□□ -0.58
NPHP4-204ENST00000460696 L3HYPDHQ96EM0 354 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 MGME1Q9BQP7 344 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 RPS6KA6Q9UK32 745 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 INSL5Q9Y5Q6 135 aa11.4□□□□□ -0.58
NPHP4-204ENST00000460696 H3BM21 787 aa11.4□□□□□ -0.59
NPHP4-204ENST00000460696 GSRP00390 522 aa11.4□□□□□ -0.59
NPHP4-204ENST00000460696 PGRP06401 933 aa11.4□□□□□ -0.59
NPHP4-204ENST00000460696 RAP2AP10114 183 aa11.4□□□□□ -0.59
NPHP4-204ENST00000460696 EPORP19235 508 aa11.4□□□□□ -0.59
NPHP4-204ENST00000460696 CCNA2P20248 432 aa11.4□□□□□ -0.59
NPHP4-204ENST00000460696 ITGADQ13349 1161 aa11.4□□□□□ -0.59
NPHP4-204ENST00000460696 NFATC2Q13469 925 aa11.4□□□□□ -0.59
NPHP4-204ENST00000460696 PTCHD3Q3KNS1 767 aa11.4□□□□□ -0.59
NPHP4-204ENST00000460696 BLOC1S3Q6QNY0 202 aa11.4□□□□□ -0.59
NPHP4-204ENST00000460696 LARP4Q71RC2 724 aaKnown RBP eCLIP11.4□□□□□ -0.59
NPHP4-204ENST00000460696 CFAP206Q8IYR0 622 aa11.4□□□□□ -0.59
NPHP4-204ENST00000460696 MARVELD2Q8N4S9 558 aa11.4□□□□□ -0.59
NPHP4-204ENST00000460696 SCAMP4Q969E2 229 aa11.4□□□□□ -0.59
NPHP4-204ENST00000460696 TMBIM1Q969X1 311 aa11.4□□□□□ -0.59
NPHP4-204ENST00000460696 UBXN10Q96LJ8 280 aa11.4□□□□□ -0.59
NPHP4-204ENST00000460696 ZNF510Q9Y2H8 683 aa11.4□□□□□ -0.59
NPHP4-204ENST00000460696 DFNA5O60443 496 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 IL6P05231 212 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 PRKACGP22612 351 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 HNF1BP35680 557 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 MAGEA12P43365 314 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 PRKAG1P54619 331 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 PLA2G4EQ3MJ16 856 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 LDLRAP1Q5SW96 308 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 CPTPQ5TA50 214 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 TMEM173Q86WV6 379 aaPredicted RBP11.39□□□□□ -0.59
NPHP4-204ENST00000460696 ARL10Q8N8L6 244 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 CYB5D2Q8WUJ1 264 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 FANCEQ9HB96 536 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 AIG1Q9NVV5 245 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 USE1Q9NZ43 259 aa11.39□□□□□ -0.59
NPHP4-204ENST00000460696 DPP7Q9UHL4 492 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms