RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 CDKN2AIPNLQ96HQ2 116 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 TMEM121Q9BTD3 319 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 NUDT9Q9BW91 350 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 SLC7A5P2Q9GIP4 190 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 SPRTNQ9H040 489 aaPredicted RBP11.21□□□□□ -0.61
USP4-204ENST00000416417 FANCEQ9HB96 536 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 ARNT2Q9HBZ2 717 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 LUC7LQ9NQ29 371 aaKnown RBP11.21□□□□□ -0.61
USP4-204ENST00000416417 SPHK1Q9NYA1 384 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 IMPACTQ9P2X3 320 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 CIDEBQ9UHD4 219 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 TCFL5Q9UL49 500 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 EFR3BQ9Y2G0 817 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 TDRKHQ9Y2W6 561 aaKnown RBP11.21□□□□□ -0.61
USP4-204ENST00000416417 DOPEY2Q9Y3R5 2298 aa11.21□□□□□ -0.62
USP4-204ENST00000416417 C17orf113A0A1B0GUU1 675 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 ZNF749O43361 778 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 TMEM63AO94886 807 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 RECKO95980 971 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 PTMAP06454 111 aaKnown RBP11.2□□□□□ -0.62
USP4-204ENST00000416417 CBSLP0DN79 551 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 CBSP35520 551 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 CD97P48960 835 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 GSDMDP57764 484 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 ATP1A4Q13733 1029 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 SLC9A5Q14940 896 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 PARP6Q2NL67 630 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 GPR33Q49SQ1 333 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 PRUNE1Q86TP1 453 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 ATCAYQ86WG3 371 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 KLHDC8BQ8IXV7 354 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 FDCSPQ8NFU4 85 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 OR52K1Q8NGK4 314 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 OR8K5Q8NH50 307 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 CPT1CQ8TCG5 803 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 ATG4AQ8WYN0 398 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 PANX2Q96RD6 677 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 DESI2Q9BSY9 194 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 NLNQ9BYT8 704 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 PITPNM3Q9BZ71 974 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 RBSNQ9H1K0 784 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 TFB2MQ9H5Q4 396 aaKnown RBP11.2□□□□□ -0.62
USP4-204ENST00000416417 LATS2Q9NRM7 1088 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 SLC2A6Q9UGQ3 507 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 KLHL20Q9Y2M5 609 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 NBASA2RRP1 2371 aa11.2□□□□□ -0.62
USP4-204ENST00000416417 CCDC162PA2VCL2 907 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 KLHL33A6NCF5 533 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 C2orf74A8MZ97 194 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 OR1I1O60431 355 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 RAB40ALP0C0E4 278 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 UGT2B7P16662 529 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 OTX2P32243 289 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 CETN2P41208 172 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 CACNG1Q06432 222 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 KCTD19Q17RG1 926 aaPredicted RBP11.19□□□□□ -0.62
USP4-204ENST00000416417 MLIPQ5VWP3 458 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 UNC5AQ6ZN44 842 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 PEX26Q7Z412 305 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 KIAA1328Q86T90 577 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 TMTC1Q8IUR5 882 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 C2orf73Q8N5S3 287 aaPredicted RBP11.19□□□□□ -0.62
USP4-204ENST00000416417 HEXDCQ8WVB3 486 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 ELMO1Q92556 727 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 LRFN5Q96NI6 719 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 MVB12BQ9H7P6 319 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 LRRC40Q9H9A6 602 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 MAP10Q9P2G4 905 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 SERTAD3Q9UJW9 196 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 AMFRQ9UKV5 643 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 ASF1AQ9Y294 204 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 BTNL10A8MVZ5 291 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 BHMG1C9JSJ3 638 aaPredicted RBP11.19□□□□□ -0.62
USP4-204ENST00000416417 E7EQ34 232 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 H7C0S8 307 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 VPS4BO75351 444 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 RNF224P0DH78 156 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 GP1BBP13224 206 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 MSNP26038 577 aaKnown RBP11.19□□□□□ -0.62
USP4-204ENST00000416417 FOXN2P32314 431 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 GRIA1P42261 906 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 VAV2P52735 878 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 NCF4Q15080 339 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 ZNF449Q6P9G9 518 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 SPESP1Q6UW49 350 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 CARFQ8N187 725 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 EFCAB3Q8N7B9 438 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 C19orf47Q8N9M1 422 aaKnown RBP11.19□□□□□ -0.62
USP4-204ENST00000416417 STYXQ8WUJ0 223 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 SEC14L1Q92503 715 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 N4BP2L2Q92802 583 aaPredicted RBP11.19□□□□□ -0.62
USP4-204ENST00000416417 PSMG3-AS1Q96PY0 264 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 OR2A14Q96R47 310 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 VPS37BQ9H9H4 285 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 MLXIPLQ9NP71 852 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 DHCR7Q9UBM7 475 aaKnown RBP11.19□□□□□ -0.62
USP4-204ENST00000416417 VPS4AQ9UN37 437 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 CDYLQ9Y232 598 aa11.19□□□□□ -0.62
USP4-204ENST00000416417 GOLGA6L9A6NEM1 432 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 MROH6A6NGR9 719 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms